Yao Xin-Qiu, Cato M Claire, Labudde Emily, Beyett Tyler S, Tesmer John J G, Grant Barry J
From the Departments of Computational Medicine and Bioinformatics.
Biological Chemistry, and.
J Biol Chem. 2017 Sep 29;292(39):16032-16043. doi: 10.1074/jbc.M117.807461. Epub 2017 Aug 14.
G protein-coupled receptors (GPCRs) are essential for transferring extracellular signals into carefully choreographed intracellular responses controlling diverse aspects of cell physiology. The duration of GPCR-mediated signaling is primarily regulated via GPCR kinase (GRK)-mediated phosphorylation of activated receptors. Although many GRK structures have been reported, the mechanisms underlying GRK activation are not well-understood, in part because it is unknown how these structures map to the conformational landscape available to this enzyme family. Unlike most other AGC kinases, GRKs rely on their interaction with GPCRs for activation and not phosphorylation. Here, we used principal component analysis of available GRK and protein kinase A crystal structures to identify their dominant domain motions and to provide a framework that helps evaluate how close each GRK structure is to being a catalytically competent state. Our results indicated that disruption of an interface formed between the large lobe of the kinase domain and the regulator of G protein signaling homology domain (RHD) is highly correlated with establishment of the active conformation. By introducing point mutations in the GRK5 RHD-kinase domain interface, we show with both and experiments that perturbation of this interface leads to higher phosphorylation activity. Navigation of the conformational landscape defined by this bioinformatics-based study is likely common to all GPCR-activated GRKs.
G蛋白偶联受体(GPCRs)对于将细胞外信号转化为精心编排的细胞内反应至关重要,这些反应控制着细胞生理学的各个方面。GPCR介导的信号传导持续时间主要通过GPCR激酶(GRK)介导的活化受体磷酸化来调节。尽管已经报道了许多GRK结构,但GRK激活的潜在机制尚未得到充分理解,部分原因是尚不清楚这些结构如何映射到该酶家族可用的构象景观。与大多数其他AGC激酶不同,GRKs依赖于它们与GPCRs的相互作用来激活,而不是磷酸化。在这里,我们使用了可用的GRK和蛋白激酶A晶体结构的主成分分析来识别它们的主要结构域运动,并提供一个框架,有助于评估每个GRK结构与催化活性状态的接近程度。我们的结果表明,激酶结构域的大结构域与G蛋白信号调节同源结构域(RHD)之间形成的界面的破坏与活性构象的建立高度相关。通过在GRK5 RHD-激酶结构域界面引入点突变,我们通过实验表明,该界面的扰动导致更高的磷酸化活性。基于该生物信息学研究定义的构象景观导航可能是所有GPCR激活的GRKs共有的。