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新种黄褐黄杆菌,一种从森林土壤中分离出的黄杆菌科细菌。

Flavobacterium flaviflagrans sp. nov., a bacterium of the family Flavobacteriaceae isolated from forest soil.

作者信息

Dahal Ram Hari, Chaudhary Dhiraj Kumar, Kim Jaisoo

机构信息

Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2017 Aug;67(8):2653-2659. doi: 10.1099/ijsem.0.002000. Epub 2017 Aug 15.

Abstract

Two strains of bacteria designated CB-3T and CB-31 were isolated from Kyonggi University forest soil. Cells were aerobic, Gram-stain-negative, oxidase-positive, non-motile, non-spore-forming, rod-shaped and yellow-pigmented. They were able to grow at 15-42 °C, pH 5.5-9.5 and with 0-1.5 % (w/v) NaCl concentration. Flexirubin-type pigments were absent. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strains CB-3T and CB-31 formed a lineage within the family Flavobacteriaceae of the phylum Bacteroidetes that was distinct from various species of the genus Flavobacterium, including Flavobacterium humicola UCM-46T (99.58 % sequence similarity), Flavobacterium suncheonense GH29-5T (98.12 %), Flavobacterium pedocola UCM-R36T (97.57 %), Flavobacterium fulvum UCM-R15T (96.8 %) and Flavobacterium cauense R2A-7T (96.31 %). Both strains contained MK-6 as the sole quinone. The major polar lipid was phosphatidylethanolamine. The major cellular fatty acids were iso-C15 : 0, iso-C17 : 0 3-OH, iso-C15 : 0 3-OH, summed feature 9 (iso-C17 : 1ω9c and/or C16 : 0 10-methyl) and iso-C15 : 1 G. The DNA G+C content of the strains was 35.8-36.7 mol%. DNA-DNA relatedness between strain CB-3T and the most closely related members of the genus Flavobacterium ranged from 32 % to 59 %. The morphological, physiological, chemotaxonomic and phylogenetic analyses clearly distinguished strains CB-3T and CB-31 from their closest phylogenetic neighbours. Thus, strains CB-3T and CB-31 represent a novel species of the genus Flavobacterium, for which the name Flavobacterium flaviflagrans sp. nov. is proposed. The type strain is CB-3T (=KEMB 9005-535T=KACC 19112T=NBRC 112704T).

摘要

从庆熙大学森林土壤中分离出两株细菌,分别命名为CB-3T和CB-31。细胞为需氧型,革兰氏染色阴性,氧化酶阳性,不运动,不产芽孢,杆状且呈黄色色素沉着。它们能够在15-42 °C、pH 5.5-9.5以及NaCl浓度为0-1.5 %(w/v)的条件下生长。不存在柔韧菌素型色素。基于16S rRNA基因序列的系统发育分析表明,菌株CB-3T和CB-31在拟杆菌门黄杆菌科内形成了一个分支,该分支与黄杆菌属的各种物种不同,包括土栖黄杆菌UCM-46T(序列相似性为99.58 %)、顺天黄杆菌GH29-5T(98.12 %)、土壤黄杆菌UCM-R36T(97.57 %)、暗黄杆菌UCM-R15T(96.8 %)和考恩斯黄杆菌R2A-7T(96.31 %)。两株菌株均以MK-6作为唯一醌类。主要极性脂为磷脂酰乙醇胺。主要细胞脂肪酸为异-C15 : 0、异-C17 : 0 3-OH、异-C15 : 0 3-OH、总和特征9(异-C17 : 1ω9c和/或C16 : 0 10-甲基)和异-C15 : 1 G。这些菌株的DNA G+C含量为35.8-36.7 mol%。菌株CB-3T与黄杆菌属最密切相关成员之间的DNA-DNA相关性在32 %至59 %之间。形态学、生理学、化学分类学和系统发育分析清楚地将菌株CB-3T和CB-31与其最密切的系统发育邻居区分开来。因此,菌株CB-3T和CB-31代表黄杆菌属的一个新物种,为此提出新名称黄褐黄杆菌(Flavobacterium flaviflagrans sp. nov.)。模式菌株为CB-3T(=KEMB 9005-535T=KACC 19112T=NBRC 112704T)。

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