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从森林土壤中分离出的黄褐鞭菌属新属,新种。

Arvibacter flaviflagrans gen. nov., sp. nov., isolated from forest soil.

作者信息

Chaudhary Dhiraj Kumar, Kim Jaisoo

机构信息

Department of Life Science, College of Natural Sciences, Gyeonggi University, Suwon, Kyonggi-Do 16227, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2016 Nov;66(11):4347-4354. doi: 10.1099/ijsem.0.001354. Epub 2016 Jul 28.

Abstract

During a study of the bacterial community in forest soil of Kyonggi University, Suwon, South Korea, a glistening yellow-pigmented, Gram-stain-negative, aerobic, motile and rod-shaped bacterium, designated strain C-1-16T, was isolated. This strain was non-sporulating, catalase-negative and oxidase-positive. It was able to grow at 20-42 °C, at pH 6.0-9.0 and with 0-0.5 % (w/v) NaCl. This strain was taxonomically characterized by a polyphasic approach. Based on the results of 16S rRNA gene sequence analysis, strain C-1-16T formed a lineage within the family Chitinophagaceae of the phylum Bacteroidetes and closely related to the genera Filimonas(93.53 % sequence similarity), Sediminibacterium(92.52-90.75 %), Lacibacter(91.99-91.19 %) and Parasegetibacter(91.88-91.78 %). Flexirubin-type pigment was present for strain C-1-16T. The only respiratory quinone was menaquinone-7 (MK-7) and the major polar lipid was phosphatidylethanolamine. The predominant fatty acids of strain C-1-16T were iso-C15 : 0, iso-C17 : 0 3-OH, iso-C15 : 1 G, summed feature 3 (C16 : 1ω6c and/or C16 : 1ω7c) and C16 : 0. The genomic DNA G+C content of this novel strain was 45.5 mol%. On the basis of phenotypic, genotypic and phylogenetic analysis, strain C-1-16T represents a novel species of a new genus in the family Chitinophagaceae, for which the name Arvibacter flaviflagrans gen. nov., sp. nov. is proposed. The type strain of Arvibacter flaviflagrans is C-1-16T (=KEMB 900-374T=KACC 18717T=JCM 31293T).

摘要

在对韩国水原市庆熙大学森林土壤中的细菌群落进行研究期间,分离出了一株闪闪发光的黄色色素、革兰氏染色阴性、需氧、运动且呈杆状的细菌,命名为菌株C-1-16T。该菌株不产芽孢,过氧化氢酶阴性,氧化酶阳性。它能够在20-42 °C、pH 6.0-9.0以及0-0.5 %(w/v)NaCl条件下生长。采用多相分类法对该菌株进行了分类学特征分析。基于16S rRNA基因序列分析结果,菌株C-1-16T在拟杆菌门噬几丁质菌科内形成一个分支,与Filimonas属(序列相似性为93.53 %)、Sediminibacterium属(92.52-90.75 %)Lacibacter属(91.99-91.19 %)和Parasegetibacter属(91.88-91.78 %)密切相关。菌株C-1-16T存在flexirubin型色素。唯一的呼吸醌是甲基萘醌-7(MK-7),主要极性脂是磷脂酰乙醇胺。菌株C-1-16T的主要脂肪酸为异C15 : 0、异C17 : 0 3-OH、异C15 : 1 G、总和特征3(C16 : 1ω6c和/或C16 : 1ω7c)以及C16 : 0。该新菌株的基因组DNA G+C含量为45.5 mol%。基于表型、基因型和系统发育分析,菌株C-1-16T代表噬几丁质菌科一个新属的一个新物种,为此提出新属名Arvibacter flaviflagrans gen. nov., sp. nov.。Arvibacter flaviflagrans的模式菌株为C-1-16T(=KEMB 900-374T=KACC 18717T=JCM 31293T)。

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