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枣（Ziziphus jujuba Mill.）中SBP-box基因家族的全基因组组织与表达谱分析

Genome-Wide Organization and Expression Profiling of the SBP-Box Gene Family in Chinese Jujube (Ziziphus jujuba Mill.).

作者信息

Song Shuang, Zhou Heying, Sheng Songbai, Cao Ming, Li Yingyue, Pang Xiaoming

机构信息

Beijing Advanced Innovation Center for Tree Breeding by Molecular Design, National Engineering Laboratory for Tree Breeding, Key Laboratory of Genetics and Breeding in Forest Trees and Ornamental Plants, Ministry of Education, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing 100083, China.

National Foundation for Improved Cultivar of Chinese Jujube, Cangzhou 061000, China.

出版信息

Int J Mol Sci. 2017 Aug 15;18(8):1734. doi: 10.3390/ijms18081734.

DOI:10.3390/ijms18081734
PMID:28809790
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5578124/
Abstract

Transcription factors play vital roles in the developmental processes of plants. The SQUAMOSA promoter binding protein (SBP) genes encode a family of plant-specific transcription factors and plays many crucial roles in plant development. In this study, 16 SBP-box gene family members were identified in Mill. Dongzao (Dongzao), which were distributed over 8 chromosomes. They were classified into seven groups according to their phylogenetic relationships with other SBP-box gene families. Within each group, genes shared similar exon-intron structures and motif locations. The number of exons varied among the groups. We identified 12 homologous gene pairs between Dongzao and . Expression profiling revealed that and expressed highly in mature fruits, expressed higher in mature leaves than other tissues and the expression level of was much higher in the flowers. The transcriptome analysis indicated that ZjSBPs had different expression patterns in various tissues. This study represents the first systematic analysis of the SBP-box gene family in . The data presented here provides a foundation for understanding the crucial roles of genes in plant growth and development.

摘要

转录因子在植物的发育过程中发挥着至关重要的作用。SQUAMOSA启动子结合蛋白（SBP）基因编码一类植物特有的转录因子，在植物发育中发挥许多关键作用。在本研究中，在冬枣（Dongzao）中鉴定出16个SBP-box基因家族成员，它们分布在8条染色体上。根据它们与其他SBP-box基因家族的系统发育关系，将它们分为七组。在每组中，基因具有相似的外显子-内含子结构和基序位置。外显子的数量在各组之间有所不同。我们在冬枣和[未提及的物种]之间鉴定出12对同源基因对。表达谱分析表明，[未提及的基因1]和[未提及的基因2]在成熟果实中高表达，[未提及的基因3]在成熟叶片中的表达高于其他组织，而[未提及的基因4]在花中的表达水平要高得多。转录组分析表明，ZjSBP在不同组织中具有不同的表达模式。本研究是对[未提及的物种]中SBP-box基因家族的首次系统分析。此处提供的数据为理解[未提及的物种]基因在植物生长发育中的关键作用奠定了基础。

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2
MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.MEGA7：适用于更大数据集的分子进化遗传学分析版本7.0
Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.
3
Genome-Wide Characterization of Simple Sequence Repeat (SSR) Loci in Chinese Jujube and Jujube SSR Primer Transferability.
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BMC Plant Biol. 2023 Jan 18;23(1):40. doi: 10.1186/s12870-023-04044-x.
4
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5
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6
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7
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10
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