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花生(L.)基因家族的鉴定与特征分析揭示了它们在发育和胁迫耐受性中的假定作用。

identification and characterization of gene family in peanut ( L.) reveals their putative roles in development and stress tolerance.

作者信息

Cai Tiecheng, Sharif Yasir, Zhuang Yuhui, Yang Qiang, Chen Xiangyu, Chen Kun, Chen Yuting, Gao Meijia, Dang Hao, Pan Yijing, Raza Ali, Zhang Chong, Chen Hua, Zhuang Weijian

机构信息

Center of Legume Plant Genetics and System Biology, College of Agronomy, Fujian Agriculture and Forestry University (FAFU), Fuzhou, Fujian, China.

College of Life Science, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China.

出版信息

Front Plant Sci. 2023 Mar 31;14:1145624. doi: 10.3389/fpls.2023.1145624. eCollection 2023.

Abstract

Cultivated peanut () is a leading protein and oil-providing crop and food source in many countries. At the same time, it is affected by a number of biotic and abiotic stresses. O-methyltransferases () play important roles in secondary metabolism, biotic and abiotic stress tolerance. However, the genes have not been comprehensively analyzed in peanut. In this study, we performed a genome-wide investigation of genes (). Gene structure, motifs distribution, phylogenetic history, genome collinearity and duplication of were studied in detail. Promoter -elements, protein-protein interactions, and micro-RNAs targeting were also predicted. We also comprehensively studied their expression in different tissues and under different stresses. We identified 116 genes in the genome of cultivated peanut. Phylogenetically, were divided into three groups. Tandem and segmental duplication events played a role in the evolution of , and purifying selection pressure drove the duplication process. promoters were enriched in several key -elements involved in growth and development, hormones, light, and defense-related activities. Micro-RNAs from 12 different families targeted 35 . GO enrichment analysis indicated that are highly enriched in transferase and catalytic activities, cellular metabolic and biosynthesis processes. Transcriptome datasets revealed that possessed varying expression levels in different tissues and under hormones, water, and temperature stress. Expression profiling based on qRT-PCR results also supported the transcriptome results. This study provides the theoretical basis for further work on the biological roles of genes for developmental and stress responses.

摘要

栽培花生()是许多国家主要的蛋白质和油脂供应作物及食物来源。同时,它受到多种生物和非生物胁迫的影响。O-甲基转移酶()在次生代谢、生物和非生物胁迫耐受性中发挥重要作用。然而,花生中的基因尚未得到全面分析。在本研究中,我们对基因()进行了全基因组调查。详细研究了基因的结构、基序分布、系统发育历史、基因组共线性和复制情况。还预测了启动子元件、蛋白质-蛋白质相互作用以及靶向的微小RNA。我们还全面研究了它们在不同组织和不同胁迫下的表达情况。我们在栽培花生基因组中鉴定出116个基因。从系统发育角度来看,基因被分为三组。串联和片段重复事件在基因的进化中发挥了作用,纯化选择压力推动了复制过程。启动子富含参与生长发育、激素、光和防御相关活动的几个关键元件。来自12个不同家族的微小RNA靶向35个基因。基因本体富集分析表明,基因在转移酶和催化活性、细胞代谢和生物合成过程中高度富集。转录组数据集显示,基因在不同组织以及激素、水分和温度胁迫下具有不同的表达水平。基于qRT-PCR结果的表达谱分析也支持了转录组结果。本研究为进一步研究基因在发育和胁迫反应中的生物学作用提供了理论基础。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4aa8/10102615/f13b9effbaa9/fpls-14-1145624-g001.jpg

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