Gao Mimi, Held Christoph, Patra Satyajit, Arns Loana, Sadowski Gabriele, Winter Roland
TU Dortmund University, Faculty of Chemistry and Chemical Biology, Physical Chemistry I-Biophysical Chemistry, Otto Hahn Str. 4a, 44227, Dortmund, Germany.
TU Dortmund University, Department of Biochemical and Chemical Engineering, Emil-Figge-Str. 70, 44227, Dortmund, Germany.
Chemphyschem. 2017 Nov 3;18(21):2951-2972. doi: 10.1002/cphc.201700762. Epub 2017 Sep 27.
The free energy and conformational landscape of biomolecular systems as well as biochemical reactions depend not only on temperature and pressure, but also on the particular solution conditions. Such conditions include the effects of cosolvents (for example osmolytes) and macromolecular crowding, which are crucial components to understand the energetics and kinetics of biological processes in living system. Such conditions are also important for the understanding of many debilitating diseases, such as those where misfolding and amyloid formation of proteins are involved. Moreover, understanding their effects on biomolecular processes is prerequisite for designing industrially relevant enzymatic reactions, which seldom take place under neat conditions. Here, we review and discuss experimental and theoretical studies on the characterization of cosolvent and crowding induced effects in biologically relevant systems, approaching even the complexity of living organisms. In particular, we focus on cosolvent and crowding effects on the conformational equilibrium and folding kinetics of proteins and nucleic acids as well as on enzymatic reactions, including their effects on the temperature and pressure dependence of these processes. By presenting a few representative examples, we show how such effects are unveiled and described in thermodynamic and kinetic terms.
生物分子系统以及生化反应的自由能和构象态势不仅取决于温度和压力,还取决于特定的溶液条件。这些条件包括共溶剂(如渗透溶质)和大分子拥挤效应,它们是理解生命系统中生物过程的能量学和动力学的关键组成部分。这些条件对于理解许多使人衰弱的疾病也很重要,比如那些涉及蛋白质错误折叠和淀粉样蛋白形成的疾病。此外,了解它们对生物分子过程的影响是设计与工业相关的酶促反应的先决条件,而这种反应很少在纯条件下发生。在这里,我们回顾并讨论了关于在生物相关系统中表征共溶剂和拥挤诱导效应的实验和理论研究,甚至涉及到了生物体的复杂性。特别地,我们关注共溶剂和拥挤效应在蛋白质和核酸的构象平衡、折叠动力学以及酶促反应方面的影响,包括它们对这些过程的温度和压力依赖性的影响。通过给出一些有代表性的例子,我们展示了如何从热力学和动力学角度揭示和描述这些效应。