具有紫杉醇生物合成潜力的黄麻内生菌SDL-CO-2015-1的基因组序列草图
Draft Genome Sequence of SDL-CO-2015-1, a Jute Endophyte with a Potential for Paclitaxel Biosynthesis.
作者信息
Das Avizit, Ahmed Oly, Baten A K M Abdul, Bushra Samira, Islam M Tariqul, Ferdous Ahlan Sabah, Islam Mohammad Riazul, Khan Haseena
机构信息
Department of Biochemistry and Molecular Biology, University of Dhaka, Dhaka, Bangladesh.
Southern Cross Plant Science, Southern Cross University, Lismore, New South Wales, Australia.
出版信息
Genome Announc. 2017 Aug 17;5(33):e00825-17. doi: 10.1128/genomeA.00825-17.
Abstract
strain SDL-CO-2015-1, a basidiomycete fungus, was identified as an endophyte from a jute species, var. 2015, and found to produce paclitaxel, a diterpenic polyoxygenated pseudoalkaloid with antitumor activity. Here, we report the draft genome sequence (42.8 Mb with 9,395 genes) of this strain.
摘要
菌株SDL-CO-2015-1是一种担子菌真菌，从黄麻品种var. 2015中被鉴定为内生菌，并发现其能产生紫杉醇，一种具有抗肿瘤活性的二萜多氧化假生物碱。在此，我们报告该菌株的基因组草图序列（42.8 Mb，含9395个基因）。
相似文献
1
Draft Genome Sequence of SDL-CO-2015-1, a Jute Endophyte with a Potential for Paclitaxel Biosynthesis.具有紫杉醇生物合成潜力的黄麻内生菌SDL-CO-2015-1的基因组序列草图
Genome Announc. 2017 Aug 17;5(33):e00825-17. doi: 10.1128/genomeA.00825-17.
2
Genome and secretome analysis of jute endophyte Grammothele lineata strain SDL-CO-2015-1: Insights into its lignocellulolytic structure and secondary metabolite profile.黄麻内生菌 Grammothele lineata 菌株 SDL-CO-2015-1 的基因组和分泌组分析：对其木质纤维素结构和次生代谢产物特征的深入了解。
Genomics. 2020 Jul;112(4):2794-2803. doi: 10.1016/j.ygeno.2020.03.017. Epub 2020 Mar 23.
3
An endophytic Basidiomycete, Grammothele lineata, isolated from Corchorus olitorius, produces paclitaxel that shows cytotoxicity.从黄麻中分离出的一种内生担子菌——线条粘束孢，能产生具有细胞毒性的紫杉醇。
PLoS One. 2017 Jun 21;12(6):e0178612. doi: 10.1371/journal.pone.0178612. eCollection 2017.
4
Population diversity of bacterial endophytes from jute (Corchorus olitorius) and evaluation of their potential role as bioinoculants.麻类植物（黄麻）内生细菌的种群多样性及其作为生物接种剂的潜在作用评价。
Microbiol Res. 2018 Mar;208:43-53. doi: 10.1016/j.micres.2018.01.008.
5
Reference genomes of the two cultivated jute species.两种栽培麻类作物的参考基因组。
Plant Biotechnol J. 2021 Nov;19(11):2235-2248. doi: 10.1111/pbi.13652. Epub 2021 Jul 8.
6
The draft genome of cv. JRO-524 (Navin).cv. JRO - 524（纳文）的基因组草图
Genom Data. 2017 May 7;12:151-154. doi: 10.1016/j.gdata.2017.05.007. eCollection 2017 Jun.
7
Comparative genomics of two jute species and insight into fibre biogenesis.两种槿麻属物种的比较基因组学研究与纤维生物发生机制的研究。
Nat Plants. 2017 Jan 30;3:16223. doi: 10.1038/nplants.2016.223.
8
First Report of a 16SrV-C Phytoplasma Causing Little Leaf and Bunchy Top of Tossa Jute (Corchorus olitorius) in India.印度首次报道16SrV-C植原体引起托萨黄麻（Corchorus olitorius）小叶和丛枝病
Plant Dis. 2014 Apr;98(4):565. doi: 10.1094/PDIS-08-13-0826-PDN.
9
Morphological, Histobiochemical and Molecular Characterisation of Low Lignin Phloem Fibre (llpf) Mutant of Dark Jute (Corchorus olitorius L.).深色黄麻（Corchorus olitorius L.）低木质素韧皮纤维（llpf）突变体的形态学、组织生化及分子特征分析
Appl Biochem Biotechnol. 2017 Nov;183(3):980-992. doi: 10.1007/s12010-017-2477-5. Epub 2017 May 11.
10
Dietary supplementation of jute leaf (Corchorus olitorius) modulates hepatic delta-aminolevulinic acid dehydratase (δ-ALAD) activity and oxidative status in high-fat fed/low streptozotocin-induced diabetic rats.饲料中添加槿麻（Corchorus olitorius）叶可调节高脂肪喂养/低链脲佐菌素诱导的糖尿病大鼠肝脏 δ-氨基酮戊酸脱水酶（δ-ALAD）活性和氧化状态。
J Food Biochem. 2019 Aug;43(8):e12949. doi: 10.1111/jfbc.12949. Epub 2019 Jun 13.
引用本文的文献
1
Insights into Taxol® biosynthesis by endophytic fungi.内生真菌对紫杉醇生物合成的研究进展。
Appl Microbiol Biotechnol. 2023 Oct;107(20):6151-6162. doi: 10.1007/s00253-023-12713-y. Epub 2023 Aug 22.
本文引用的文献
1
An endophytic Basidiomycete, Grammothele lineata, isolated from Corchorus olitorius, produces paclitaxel that shows cytotoxicity.从黄麻中分离出的一种内生担子菌——线条粘束孢，能产生具有细胞毒性的紫杉醇。
PLoS One. 2017 Jun 21;12(6):e0178612. doi: 10.1371/journal.pone.0178612. eCollection 2017.
2
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
3
Biosynthesis of terpenoid natural products in fungi.真菌中萜类天然产物的生物合成。
Adv Biochem Eng Biotechnol. 2015;148:19-61. doi: 10.1007/10_2014_283.
4
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.Pilon：一种用于全面微生物变异检测和基因组组装改进的集成工具。
PLoS One. 2014 Nov 19;9(11):e112963. doi: 10.1371/journal.pone.0112963. eCollection 2014.
5
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
6
MAKER: an easy-to-use annotation pipeline designed for emerging model organism genomes.MAKER：一个专为新兴模式生物基因组设计的易于使用的注释流程。
Genome Res. 2008 Jan;18(1):188-96. doi: 10.1101/gr.6743907. Epub 2007 Nov 19.
7
InterProScan: protein domains identifier.InterProScan：蛋白质结构域识别工具。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W116-20. doi: 10.1093/nar/gki442.
Zotero 插件