• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

系统生物学推导的 BMP 梯度形成的源-汇机制。

Systems biology derived source-sink mechanism of BMP gradient formation.

机构信息

Department of Cell and DevelopmentalBiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, United States.

Department of Agricultural and Biological Engineering, Purdue University, West Lafayette, United States.

出版信息

Elife. 2017 Aug 9;6:e22199. doi: 10.7554/eLife.22199.

DOI:10.7554/eLife.22199
PMID:28826472
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5590806/
Abstract

A morphogen gradient of Bone Morphogenetic Protein (BMP) signaling patterns the dorsoventral embryonic axis of vertebrates and invertebrates. The prevailing view in vertebrates for BMP gradient formation is through a counter-gradient of BMP antagonists, often along with ligand shuttling to generate peak signaling levels. To delineate the mechanism in zebrafish, we precisely quantified the BMP activity gradient in wild-type and mutant embryos and combined these data with a mathematical model-based computational screen to test hypotheses for gradient formation. Our analysis ruled out a BMP shuttling mechanism and a transcriptionally-informed gradient mechanism. Surprisingly, rather than supporting a counter-gradient mechanism, our analyses support a fourth model, a source-sink mechanism, which relies on a restricted BMP antagonist distribution acting as a sink that drives BMP flux dorsally and gradient formation. We measured Bmp2 diffusion and found that it supports the source-sink model, suggesting a new mechanism to shape BMP gradients during development.

摘要

骨形态发生蛋白 (BMP) 的形态发生梯度模式化了脊椎动物和无脊椎动物的背腹胚胎轴。在脊椎动物中,BMP 梯度形成的主要观点是通过 BMP 拮抗剂的逆梯度,通常伴随着配体穿梭以产生峰值信号水平。为了阐明斑马鱼中的机制,我们精确地量化了野生型和突变型胚胎中的 BMP 活性梯度,并将这些数据与基于数学模型的计算筛选相结合,以测试梯度形成的假设。我们的分析排除了 BMP 穿梭机制和转录信息梯度机制。令人惊讶的是,我们的分析并没有支持逆梯度机制,而是支持第四个模型,即源-汇机制,该机制依赖于作为汇的受限 BMP 拮抗剂分布,该分布充当将 BMP 通量向背部驱动并形成梯度的汇。我们测量了 Bmp2 的扩散,发现它支持源-汇模型,这表明在发育过程中形成 BMP 梯度的一种新机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/9a752f15fcbb/elife-22199-fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/b3eb691e5996/elife-22199-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/2b56b13df279/elife-22199-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/9f346e1cfce4/elife-22199-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/e493d8147cdf/elife-22199-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/2e91e7be93ec/elife-22199-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/a2d2bc1e5544/elife-22199-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/ba8932e6c29b/elife-22199-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/8c8fcf3c2a3e/elife-22199-fig6-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/1113a51e5648/elife-22199-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/f6eab070ac9a/elife-22199-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/db64f17eb9bd/elife-22199-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/1a181641b68f/elife-22199-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/9a752f15fcbb/elife-22199-fig11.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/b3eb691e5996/elife-22199-fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/2b56b13df279/elife-22199-fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/9f346e1cfce4/elife-22199-fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/e493d8147cdf/elife-22199-fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/2e91e7be93ec/elife-22199-fig4-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/a2d2bc1e5544/elife-22199-fig5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/ba8932e6c29b/elife-22199-fig6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/8c8fcf3c2a3e/elife-22199-fig6-figsupp1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/1113a51e5648/elife-22199-fig7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/f6eab070ac9a/elife-22199-fig8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/db64f17eb9bd/elife-22199-fig9.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/1a181641b68f/elife-22199-fig10.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/42c3/5590806/9a752f15fcbb/elife-22199-fig11.jpg

相似文献

1
Systems biology derived source-sink mechanism of BMP gradient formation.系统生物学推导的 BMP 梯度形成的源-汇机制。
Elife. 2017 Aug 9;6:e22199. doi: 10.7554/eLife.22199.
2
Computational analysis of BMP gradients in dorsal-ventral patterning of the zebrafish embryo.斑马鱼胚胎背腹模式形成中骨形态发生蛋白梯度的计算分析
J Theor Biol. 2007 Oct 21;248(4):579-89. doi: 10.1016/j.jtbi.2007.05.026. Epub 2007 Jun 6.
3
Dynamics of BMP signaling and distribution during zebrafish dorsal-ventral patterning.斑马鱼背腹模式形成过程中 BMP 信号转导和分布的动态变化。
Elife. 2017 Aug 31;6:e25861. doi: 10.7554/eLife.25861.
4
Proteolytic Restriction of Chordin Range Underlies BMP Gradient Formation.蛋白水解限制 Chordin 的作用范围是 BMP 浓度梯度形成的基础。
Cell Rep. 2020 Aug 18;32(7):108039. doi: 10.1016/j.celrep.2020.108039.
5
Evaluation of BMP-mediated patterning in a 3D mathematical model of the zebrafish blastula embryo.评价 BMP 介导的斑马鱼囊胚胚胎 3D 数学模型中的模式形成。
J Math Biol. 2020 Jan;80(1-2):505-520. doi: 10.1007/s00285-019-01449-x. Epub 2019 Nov 26.
6
Organizer-derived Bmp2 is required for the formation of a correct Bmp activity gradient during embryonic development.在胚胎发育过程中,组织者衍生的 Bmp2 对于形成正确的 Bmp 活性梯度是必需的。
Nat Commun. 2014 Apr 29;5:3766. doi: 10.1038/ncomms4766.
7
Extracellular modulation of BMP activity in patterning the dorsoventral axis.骨形态发生蛋白(BMP)活性在背腹轴模式形成中的细胞外调节
Birth Defects Res C Embryo Today. 2006 Sep;78(3):224-42. doi: 10.1002/bdrc.20079.
8
Bone morphogenetic protein heterodimers assemble heteromeric type I receptor complexes to pattern the dorsoventral axis.骨形态发生蛋白异二聚体组装异源三聚体I型受体复合物以形成背腹轴模式。
Nat Cell Biol. 2009 May;11(5):637-43. doi: 10.1038/ncb1870. Epub 2009 Apr 19.
9
Scale invariance of BMP signaling gradients in zebrafish.斑马鱼中 BMP 信号梯度的标度不变性。
Sci Rep. 2019 Apr 1;9(1):5440. doi: 10.1038/s41598-019-41840-8.
10
Cleavage of the BMP-4 antagonist chordin by zebrafish tolloid.斑马鱼类 tolloid 蛋白对骨形态发生蛋白-4(BMP-4)拮抗剂腱蛋白的切割作用
Science. 1997 Dec 12;278(5345):1937-40. doi: 10.1126/science.278.5345.1937.

引用本文的文献

1
Hedgehog and Bmp signaling pathways play opposing roles during establishment of the cardiac inflow tract in zebrafish.刺猬信号通路和骨形态发生蛋白信号通路在斑马鱼心脏流入道的形成过程中发挥相反作用。
bioRxiv. 2025 Jul 22:2025.07.19.665705. doi: 10.1101/2025.07.19.665705.
2
Chordin-mediated BMP shuttling patterns the secondary body axis in a cnidarian.脊索蛋白介导的骨形态发生蛋白穿梭模式在刺胞动物中形成次生体轴。
Sci Adv. 2025 Jun 13;11(24):eadu6347. doi: 10.1126/sciadv.adu6347.
3
Quantitative Staging of Mid-blastula Zebrafish Embryos by Nuclei Counting.

本文引用的文献

1
Morphogen rules: design principles of gradient-mediated embryo patterning.形态发生素规则:梯度介导的胚胎模式形成的设计原则
Development. 2015 Dec 1;142(23):3996-4009. doi: 10.1242/dev.129452.
2
Temporally coordinated signals progressively pattern the anteroposterior and dorsoventral body axes.时间协调的信号逐步塑造前后和背腹体轴。
Semin Cell Dev Biol. 2015 Jun;42:118-33. doi: 10.1016/j.semcdb.2015.06.003. Epub 2015 Jun 27.
3
EMBRYO DEVELOPMENT. BMP gradients: A paradigm for morphogen-mediated developmental patterning.胚胎发育。BMP 梯度:形态发生素介导的发育模式形成的范例。
通过细胞核计数对囊胚中期斑马鱼胚胎进行定量分期
Methods Mol Biol. 2025;2923:241-260. doi: 10.1007/978-1-0716-4522-2_15.
4
Temporal dynamics of BMP/Nodal ratio drive tissue-specific gastrulation morphogenesis.骨形态发生蛋白/节点信号通路比例的时间动态驱动组织特异性原肠胚形成形态发生。
Development. 2025 May 1;152(9). doi: 10.1242/dev.202931.
5
EpicTope: narrating protein sequence features to identify non-disruptive epitope tagging sites.EpicTope:通过叙述蛋白质序列特征来识别非干扰性表位标签位点。
bioRxiv. 2024 Mar 11:2024.03.03.583232. doi: 10.1101/2024.03.03.583232.
6
Highly conserved and extremely evolvable: BMP signalling in secondary axis patterning of Cnidaria and Bilateria.高度保守且极具进化性:BMP 信号在刺胞动物和两侧对称动物的次生轴模式形成中的作用。
Dev Genes Evol. 2024 Jun;234(1):1-19. doi: 10.1007/s00427-024-00714-4. Epub 2024 Mar 13.
7
Shaping and Structuring of Polymer Gels.聚合物凝胶的成型与结构
Gels. 2024 Feb 7;10(2):134. doi: 10.3390/gels10020134.
8
Robust axis elongation by Nodal-dependent restriction of BMP signaling.通过 Nodal 依赖性的 BMP 信号限制实现强壮的轴伸长。
Development. 2024 Feb 15;151(4). doi: 10.1242/dev.202316. Epub 2024 Feb 19.
9
R-Spondin 2 governs Xenopus left-right body axis formation by establishing an FGF signaling gradient.R-Spondin 2通过建立FGF信号梯度来调控非洲爪蟾左右体轴的形成。
Nat Commun. 2024 Feb 2;15(1):1003. doi: 10.1038/s41467-024-44951-7.
10
Reconstitution of morphogen shuttling circuits.形态发生因子穿梭回路的重建。
Sci Adv. 2023 Jul 14;9(28):eadf9336. doi: 10.1126/sciadv.adf9336. Epub 2023 Jul 12.
Science. 2015 Jun 26;348(6242):aaa5838. doi: 10.1126/science.aaa5838.
4
Axis Patterning by BMPs: Cnidarian Network Reveals Evolutionary Constraints.骨形态发生蛋白介导的轴模式形成:刺胞动物网络揭示进化限制
Cell Rep. 2015 Mar 17;10(10):1646-1654. doi: 10.1016/j.celrep.2015.02.035. Epub 2015 Mar 12.
5
BMP signalling: agony and antagony in the family.BMP 信号:家族中的痛苦与拮抗。
Trends Cell Biol. 2015 May;25(5):249-64. doi: 10.1016/j.tcb.2014.12.004. Epub 2015 Jan 12.
6
SNP genotyping using KASPar assays.使用竞争性等位基因特异性PCR(KASPar)分析进行单核苷酸多态性(SNP)基因分型
Methods Mol Biol. 2015;1245:243-56. doi: 10.1007/978-1-4939-1966-6_18.
7
Nanoscale structure of the BMP antagonist chordin supports cooperative BMP binding.骨形态发生蛋白拮抗剂脊索蛋白的纳米级结构支持骨形态发生蛋白的协同结合。
Proc Natl Acad Sci U S A. 2014 Sep 9;111(36):13063-8. doi: 10.1073/pnas.1404166111. Epub 2014 Aug 25.
8
Making models match measurements: model optimization for morphogen patterning networks.使模型与测量结果相匹配:形态发生素模式网络的模型优化
Semin Cell Dev Biol. 2014 Nov;35:109-23. doi: 10.1016/j.semcdb.2014.06.017. Epub 2014 Jul 9.
9
Morphogen interpretation: the transcriptional logic of neural tube patterning.形态发生素解读:神经管模式形成的转录逻辑。
Curr Opin Genet Dev. 2013 Aug;23(4):423-8. doi: 10.1016/j.gde.2013.04.003. Epub 2013 May 29.
10
Generation and interpretation of FGF morphogen gradients in vertebrates.脊椎动物中 FGF 形态发生素梯度的产生和解释。
Curr Opin Genet Dev. 2013 Aug;23(4):415-22. doi: 10.1016/j.gde.2013.03.002. Epub 2013 May 10.