Bradford Yvonne M, Toro Sabrina, Ramachandran Sridhar, Ruzicka Leyla, Howe Douglas G, Eagle Anne, Kalita Patrick, Martin Ryan, Taylor Moxon Sierra A, Schaper Kevin, Westerfield Monte
Zebrafish Model Organism Database, University of Oregon, Eugene, Oregon.
ILAR J. 2017 Jul 1;58(1):4-16. doi: 10.1093/ilar/ilw040.
The Zebrafish Model Organism Database (ZFIN; https://zfin.org) is the central resource for genetic, genomic, and phenotypic data for zebrafish (Danio rerio) research. ZFIN continuously assesses trends in zebrafish research, adding new data types and providing data repositories and tools that members of the research community can use to navigate data. The many research advantages and flexibility of manipulation of zebrafish have made them an increasingly attractive animal to model and study human disease.To facilitate disease-related research, ZFIN developed support to provide human disease information as well as annotation of zebrafish models of human disease. Human disease term pages at ZFIN provide information about disease names, synonyms, and references to other databases as well as a list of publications reporting studies of human diseases in which zebrafish were used. Zebrafish orthologs of human genes that are implicated in human disease etiology are routinely studied to provide an understanding of the molecular basis of disease. Therefore, a list of human genes involved in the disease with their corresponding zebrafish ortholog is displayed on the disease page, with links to additional information regarding the genes and existing mutations. Studying human disease often requires the use of models that recapitulate some or all of the pathologies observed in human diseases. Access to information regarding existing and published models can be critical, because they provide a tractable way to gain insight into the phenotypic outcomes of the disease. ZFIN annotates zebrafish models of human disease and supports retrieval of these published models by listing zebrafish models on the disease term page as well as by providing search interfaces and data download files to access the data. The improvements ZFIN has made to annotate, display, and search data related to human disease, especially zebrafish models for disease and disease-associated gene information, should be helpful to researchers and clinicians considering the use of zebrafish to study human disease.
斑马鱼模式生物数据库(ZFIN;https://zfin.org)是斑马鱼(Danio rerio)研究的遗传、基因组和表型数据的核心资源。ZFIN持续评估斑马鱼研究的趋势,添加新的数据类型,并提供数据存储库和工具,供研究界成员用于浏览数据。斑马鱼具有诸多研究优势且易于操作,这使其成为用于模拟和研究人类疾病的越来越有吸引力的动物。为促进与疾病相关的研究,ZFIN开发了相关支持,以提供人类疾病信息以及人类疾病斑马鱼模型的注释。ZFIN上的人类疾病术语页面提供有关疾病名称、同义词、与其他数据库的参考文献,以及一份报告使用斑马鱼进行人类疾病研究的出版物列表。对涉及人类疾病病因的人类基因的斑马鱼直系同源基因进行常规研究,以了解疾病的分子基础。因此,疾病页面上会显示与该疾病相关的人类基因及其相应的斑马鱼直系同源基因列表,并提供指向有关这些基因和现有突变的更多信息的链接。研究人类疾病通常需要使用能够重现人类疾病中观察到的部分或全部病理特征的模型。获取有关现有和已发表模型的信息至关重要,因为它们提供了一种易于处理的方式来深入了解疾病的表型结果。ZFIN对人类疾病的斑马鱼模型进行注释,并通过在疾病术语页面上列出斑马鱼模型,以及提供搜索界面和数据下载文件来访问数据,支持对这些已发表模型的检索。ZFIN在注释、显示和搜索与人类疾病相关的数据方面所做的改进,尤其是疾病的斑马鱼模型和疾病相关基因信息,应该会对考虑使用斑马鱼研究人类疾病的研究人员和临床医生有所帮助。