Buceta Javier
Department of Bioengineering, Lehigh University, Iacocca Hall, 111 Research Drive, Bethlehem, PA 18015, USA
Department of Chemical and Biomolecular Engineering, Lehigh University, Iacocca Hall, 111 Research Drive, Bethlehem, PA 18015, USA.
J R Soc Interface. 2017 Aug;14(133). doi: 10.1098/rsif.2017.0316.
Herein we present a framework to characterize different sources of protein expression variability in Turing patterned tissues. In this context, we introduce the concept of granular noise to account for the unavoidable fluctuations due to finite cell-size effects and show that the nearest-neighbours autocorrelation function provides the means to measure it. To test our findings, we perform experiments of growing tissues driven by a generic activator-inhibitor dynamics. Our results show that the relative importance of different sources of noise depends on the ratio between the characteristic size of cells and that of the pattern domains and on the ratio between the pattern amplitude and the effective intensity of the biochemical fluctuations. Importantly, our framework provides the tools to measure and distinguish different stochastic contributions during patterning: granularity versus biochemical noise. In addition, our analysis identifies the protein species that buffer the stochasticity the best and, consequently, it can help to determine key instructive signals in systems driven by a Turing instability. Altogether, we expect our study to be relevant in developmental processes leading to the formation of periodic patterns in tissues.
在此,我们提出了一个框架,用于表征图灵模式组织中蛋白质表达变异性的不同来源。在此背景下,我们引入了颗粒噪声的概念,以解释由于有限细胞大小效应导致的不可避免的波动,并表明最近邻自相关函数提供了测量它的方法。为了验证我们的发现,我们进行了由通用激活剂-抑制剂动力学驱动的组织生长实验。我们的结果表明,不同噪声源的相对重要性取决于细胞特征大小与模式域特征大小之间的比率,以及模式幅度与生化波动有效强度之间的比率。重要的是,我们的框架提供了测量和区分图案形成过程中不同随机贡献的工具:颗粒度与生化噪声。此外,我们的分析确定了最能缓冲随机性的蛋白质种类,因此,它有助于确定由图灵不稳定性驱动的系统中的关键指导信号。总之,我们预计我们的研究与导致组织中形成周期性模式的发育过程相关。