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从植物DNA库中发现未知的真菌多样性。

Uncovering unseen fungal diversity from plant DNA banks.

作者信息

Datlof Erin M, Amend Anthony S, Earl Kamala, Hayward Jeremy, Morden Clifford W, Wade Rachael, Zahn Geoffrey, Hynson Nicole A

机构信息

Department of Botany, University of Hawai'i at Mānoa, Honolulu, HI, United States of America.

School of Forest Resources and Conservation, University of Florida, Gainesville, FL, United States of America.

出版信息

PeerJ. 2017 Aug 28;5:e3730. doi: 10.7717/peerj.3730. eCollection 2017.

DOI:10.7717/peerj.3730
PMID:28875077
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5578370/
Abstract

Throughout the world DNA banks are used as storage repositories for genetic diversity of organisms ranging from plants to insects to mammals. Designed to preserve the genetic information for organisms of interest, these banks also indirectly preserve organisms' associated microbiomes, including fungi associated with plant tissues. Studies of fungal biodiversity lag far behind those of macroorganisms, such as plants, and estimates of global fungal richness are still widely debated. Utilizing previously collected specimens to study patterns of fungal diversity could significantly increase our understanding of overall patterns of biodiversity from snapshots in time. Here, we investigated the fungi inhabiting the phylloplane among species of the endemic Hawaiian plant genus, (Campanulaceae). Utilizing next generation DNA amplicon sequencing, we uncovered approximately 1,780 fungal operational taxonomic units from just 20 DNA bank samples collected throughout the main Hawaiian Islands. Using these historical samples, we tested the macroecological pattern of decreasing community similarity with decreasing geographic proximity. We found a significant distance decay pattern among associated fungal communities. This study provides the first insights into elucidating patterns of microbial diversity through the use of DNA bank repository samples.

摘要

在世界各地,DNA库被用作从植物到昆虫再到哺乳动物等各种生物遗传多样性的存储库。这些库旨在保存感兴趣生物的遗传信息,同时也间接保存了生物的相关微生物群落,包括与植物组织相关的真菌。对真菌生物多样性的研究远远落后于对植物等大型生物的研究,全球真菌丰富度的估计仍存在广泛争议。利用先前收集的标本研究真菌多样性模式,可以通过时间快照显著增加我们对生物多样性总体模式的理解。在这里,我们调查了夏威夷特有植物属(桔梗科)物种叶面上栖息的真菌。利用下一代DNA扩增子测序,我们从整个夏威夷主要岛屿仅收集的20个DNA库样本中发现了约1780个真菌操作分类单元。利用这些历史样本,我们测试了群落相似性随地理距离减小而降低的宏观生态模式。我们在相关真菌群落中发现了显著的距离衰减模式。这项研究首次通过使用DNA库样本深入了解了微生物多样性模式。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/10c4897c4ee3/peerj-05-3730-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/4dd497221aa8/peerj-05-3730-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/b0a6df7a8bb6/peerj-05-3730-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/9b6e43513fe1/peerj-05-3730-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/f143cc3e85ff/peerj-05-3730-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/10c4897c4ee3/peerj-05-3730-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/4dd497221aa8/peerj-05-3730-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/b0a6df7a8bb6/peerj-05-3730-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/9b6e43513fe1/peerj-05-3730-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/f143cc3e85ff/peerj-05-3730-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a12e/5578370/10c4897c4ee3/peerj-05-3730-g005.jpg

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