• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

一种在量子力学/分子力学(QM/MM)方法中纳入泡利排斥和量子色散效应的通用途径。

A General Route to Include Pauli Repulsion and Quantum Dispersion Effects in QM/MM Approaches.

作者信息

Giovannini Tommaso, Lafiosca Piero, Cappelli Chiara

机构信息

Scuola Normale Superiore , Piazza dei Cavalieri 7, 56126 Pisa, Italy.

出版信息

J Chem Theory Comput. 2017 Oct 10;13(10):4854-4870. doi: 10.1021/acs.jctc.7b00776. Epub 2017 Sep 29.

DOI:10.1021/acs.jctc.7b00776
PMID:28898079
Abstract

A methodology to account for nonelectrostatic interactions in Quantum Mechanical (QM)/Molecular Mechanics (MM) approaches is developed. Formulations for Pauli repulsion and dispersion energy, explicitly depending on the QM density, are derived. Such expressions are based on the definition of an auxiliary density on the MM portion and the Tkatchenko-Scheffler (TS) approach, respectively. The developed method is general enough to be applied to any QM/MM method and partition, provided an accurate tuning of a small number of parameters is obtained. The coupling of the method with both nonpolarizable and fully polarizable QM/fluctuating charge (FQ) approaches is reported and applied. A suitable parametrization for the aqueous solution, so that its most representative features are well reproduced, is outlined. Then, the obtained parametrization and method are applied to calculate the nonelectrostatic (repulsion and dispersion) interaction energy of nicotine in aqueous solution.

摘要

开发了一种在量子力学(QM)/分子力学(MM)方法中考虑非静电相互作用的方法。推导了明确依赖于量子力学密度的泡利排斥和色散能的公式。此类表达式分别基于MM部分上辅助密度的定义和特卡琴科 - 谢弗勒(TS)方法。所开发的方法具有足够的通用性,可应用于任何QM/MM方法和划分,前提是对少数参数进行精确调整。报告并应用了该方法与非极化和完全极化的QM/波动电荷(FQ)方法的耦合。概述了一种适用于水溶液的参数化方法,以便能很好地再现其最具代表性的特征。然后,将获得的参数化方法和该方法应用于计算尼古丁在水溶液中的非静电(排斥和色散)相互作用能。

相似文献

1
A General Route to Include Pauli Repulsion and Quantum Dispersion Effects in QM/MM Approaches.一种在量子力学/分子力学(QM/MM)方法中纳入泡利排斥和量子色散效应的通用途径。
J Chem Theory Comput. 2017 Oct 10;13(10):4854-4870. doi: 10.1021/acs.jctc.7b00776. Epub 2017 Sep 29.
2
Density-Dependent Formulation of Dispersion-Repulsion Interactions in Hybrid Multiscale Quantum/Molecular Mechanics (QM/MM) Models.混合多尺度量子/分子力学(QM/MM)模型中色散-排斥相互作用的密度相关公式。
J Chem Theory Comput. 2018 Mar 13;14(3):1671-1681. doi: 10.1021/acs.jctc.7b00912. Epub 2018 Feb 22.
3
Effective yet reliable computation of hyperfine coupling constants in solution by a QM/MM approach: Interplay between electrostatics and non-electrostatic effects.通过 QM/MM 方法在溶液中有效且可靠地计算超精细耦合常数:静电与非静电效应的相互作用。
J Chem Phys. 2019 Mar 28;150(12):124102. doi: 10.1063/1.5080810.
4
Fully Polarizable QM/Fluctuating Charge Approach to Two-Photon Absorption of Aqueous Solutions.水溶液双光子吸收的全极化量子力学/波动电荷方法
J Chem Theory Comput. 2019 Jul 9;15(7):4056-4068. doi: 10.1021/acs.jctc.9b00305. Epub 2019 Jun 17.
5
Contributions of Pauli repulsions to the energetics and physical properties computed in QM/MM methods.Pauli 排斥对 QM/MM 方法计算的能量学和物理性质的贡献。
J Comput Chem. 2013 Oct 15;34(27):2380-8. doi: 10.1002/jcc.23401. Epub 2013 Aug 6.
6
Effective Fully Polarizable QM/MM Approach To Model Vibrational Circular Dichroism Spectra of Systems in Aqueous Solution.用于模拟水溶液中体系振动圆二色光谱的有效全极化量子力学/分子力学方法
J Chem Theory Comput. 2016 Nov 8;12(11):5483-5492. doi: 10.1021/acs.jctc.6b00768. Epub 2016 Oct 14.
7
Dispersion and repulsion contributions to the solvation free energy: comparison of quantum mechanical and classical approaches in the polarizable continuum model.溶剂化自由能的色散和排斥贡献:极化连续介质模型中量子力学和经典方法的比较
J Comput Chem. 2006 Nov 30;27(15):1769-80. doi: 10.1002/jcc.20480.
8
An Estimation of Hybrid Quantum Mechanical Molecular Mechanical Polarization Energies for Small Molecules Using Polarizable Force-Field Approaches.使用可极化力场方法估算小分子的混合量子力学-分子力学极化能量
J Chem Theory Comput. 2017 Feb 14;13(2):679-695. doi: 10.1021/acs.jctc.6b01125. Epub 2017 Jan 24.
9
Linear response properties of solvated systems: a computational study.溶剂化体系的线性响应特性:一项计算研究。
Phys Chem Chem Phys. 2022 Nov 23;24(45):27866-27878. doi: 10.1039/d2cp04512e.
10
Mutually polarizable QM/MM model with in situ optimized localized basis functions.具有原位优化的局域化基函数的可相互极化的QM/MM 模型。
J Chem Phys. 2019 Feb 21;150(7):074103. doi: 10.1063/1.5080384.

引用本文的文献

1
First-Order Symmetry-Adapted Perturbation Theory with Double Exchange for Multireference Systems.用于多参考体系的含双交换的一阶对称适配微扰理论
J Chem Theory Comput. 2025 Sep 9;21(17):8362-8374. doi: 10.1021/acs.jctc.5c00629. Epub 2025 Aug 20.
2
Modeling Raman Spectra in Complex Environments: From Solutions to Surface-Enhanced Raman Scattering.复杂环境中的拉曼光谱建模:从溶液到表面增强拉曼散射
J Phys Chem Lett. 2025 Mar 27;16(12):3106-3121. doi: 10.1021/acs.jpclett.4c03591. Epub 2025 Mar 18.
3
A Vision for the Future of Multiscale Modeling.
多尺度建模的未来愿景。
ACS Phys Chem Au. 2024 Mar 4;4(3):202-225. doi: 10.1021/acsphyschemau.3c00080. eCollection 2024 May 22.
4
Multiscale Frozen Density Embedding/Molecular Mechanics Approach for Simulating Magnetic Response Properties of Solvated Systems.用于模拟溶剂化体系磁响应特性的多尺度冻结密度嵌入/分子力学方法
J Chem Theory Comput. 2024 Jan 9;20(1):266-279. doi: 10.1021/acs.jctc.3c00850. Epub 2023 Dec 18.
5
Free Energy Profile Decomposition Analysis for QM/MM Simulations of Enzymatic Reactions.自由能 Profile 分解分析在酶反应的 QM/MM 模拟中的应用。
J Chem Theory Comput. 2023 Nov 28;19(22):8234-8244. doi: 10.1021/acs.jctc.3c00973. Epub 2023 Nov 9.
6
Integrated Multiscale Multilevel Approach to Open Shell Molecular Systems.开壳分子体系的综合多尺度多层次方法。
J Chem Theory Comput. 2023 Mar 14;19(5):1446-1456. doi: 10.1021/acs.jctc.2c00805. Epub 2023 Feb 13.
7
Multiple Facets of Modeling Electronic Absorption Spectra of Systems in Solution.溶液中体系电子吸收光谱建模的多个方面
ACS Phys Chem Au. 2022 Nov 23;3(1):1-16. doi: 10.1021/acsphyschemau.2c00050. eCollection 2023 Jan 25.
8
Method to Compute the Solute-Solvent Dispersion Contribution to the Electronic Excitation Energy in Solution.计算溶液中溶质 - 溶剂色散对电子激发能贡献的方法。
J Chem Theory Comput. 2022 Nov 8;18(11):6816-6825. doi: 10.1021/acs.jctc.2c00652. Epub 2022 Oct 3.
9
Amide Spectral Fingerprints are Hydrogen Bonding-Mediated.酰胺光谱指纹是由氢键介导的。
J Phys Chem Lett. 2022 Jul 7;13(26):6200-6207. doi: 10.1021/acs.jpclett.2c01277. Epub 2022 Jun 30.
10
Evaluation of molecular photophysical and photochemical properties using linear response time-dependent density functional theory with classical embedding: Successes and challenges.使用带有经典嵌入的线性响应含时密度泛函理论评估分子光物理和光化学性质:成功与挑战。
J Chem Phys. 2022 Jun 7;156(21):210901. doi: 10.1063/5.0088271.