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水生氢噬菌属(Hydrogenophaga)新种,分离自温泉。

Hydrogenophaga aquatica sp. nov., isolated from a hot spring.

机构信息

Department of Soil and Environmental Sciences, College of Agriculture and Natural Resources, National Chung Hsing University, Taichung, Taiwan, ROC.

Agricultural Biotechnology Center, National Chung Hsing University, Taichung, Taiwan, ROC.

出版信息

Int J Syst Evol Microbiol. 2017 Oct;67(10):3716-3721. doi: 10.1099/ijsem.0.002146. Epub 2017 Sep 13.

Abstract

A polyphasic approach was used to characterize an aerobic, Gram-negative, rod-shaped bacterium (designated strain CC-KL-3) isolated from a hot spring. Phylogenetic analyses based on 16S rRNA genes indicated that strain CC-KL-3 showed highest sequence similarity to Hydrogenophaga bisanensis (97.7 %) and Hydrogenophaga atypica (97.6 %) and lower sequence similarity to other species (less than 97.6 %). The levels of DNA-DNA relatedness between strain CC-KL-3, H. bisanensis and H. atypica were estimated to be 13.0 and 8.7 % (the reciprocal value was 14.7 and 6.3 %). Strain CC-KL-3 was non-motile, without apparent flagella and able to grow between 15-42 °C (optimal 30 °С), pH 6.0-8.0 (optimal 7.0) and 0-2 % (w/v) NaCl (optimal 0 %). The DNA G+C content was 61.4 mol% and the major quinone system was ubiquinone (Q-8). The polyamine profile revealed the predominance of 2-hydroxyputrescine and putrescine and the dominant cellular fatty acids were C16 : 0 (28.9 %), C16 : 1ω7c/C16 : 1ω6c (41.4 %) and C18 : 1ω7c/C18 : 1ω6c (11.9 %). These data corroborated the affiliation of strain CC-KL-3 to the genus Hydrogenophaga. Based on the distinct phylogenetic, phenotypic and chemotaxonomic traits, and the results of comparative 16S rRNA gene sequence analysis, strain CC-KL-3 is considered to represent a novel species of the genus Hydrogenophaga, affiliated to the family Comamonadaceae, for which the name Hydrogenophaga aquatica sp. nov. is proposed. The type strain is CC-KL-3 (=BCRC 80937=JCM 31216).

摘要

采用多相分类法对一株好氧、革兰氏阴性、杆状细菌(命名为 CC-KL-3 菌株)进行了研究,该细菌分离自温泉。基于 16S rRNA 基因的系统发育分析表明,CC-KL-3 菌株与 Hydrogenophaga bisanensis(97.7%)和 Hydrogenophaga atypica(97.6%)的序列相似度最高,与其他物种(低于 97.6%)的序列相似度较低。CC-KL-3 菌株、H. bisanensis 和 H. atypica 之间的 DNA-DNA 同源性水平估计为 13.0%和 8.7%(倒数分别为 14.7%和 6.3%)。CC-KL-3 菌株为非运动性、无明显鞭毛,可在 15-42°C(最佳 30°C)、pH6.0-8.0(最佳 7.0)和 0-2%(w/v)NaCl(最佳 0%)下生长。DNA G+C 含量为 61.4mol%,主要醌类为 ubiquinone(Q-8)。多胺图谱显示 2-羟基腐胺和腐胺占优势,主要细胞脂肪酸为 C16:0(28.9%)、C16:1ω7c/C16:1ω6c(41.4%)和 C18:1ω7c/C18:1ω6c(11.9%)。这些数据证实了 CC-KL-3 菌株与 Hydrogenophaga 属的亲缘关系。基于独特的系统发育、表型和化学分类特征以及比较 16S rRNA 基因序列分析的结果,CC-KL-3 菌株被认为代表了 Hydrogenophaga 属的一个新种,属于 Comamonadaceae 科,建议将其命名为 Hydrogenophaga aquatica sp. nov.。模式菌株为 CC-KL-3(=BCRC 80937=JCM 31216)。

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