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核糖体碰撞对于无意义衰变过程中的质量控制至关重要。

Ribosome Collision Is Critical for Quality Control during No-Go Decay.

机构信息

Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

Department of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.

出版信息

Mol Cell. 2017 Oct 19;68(2):361-373.e5. doi: 10.1016/j.molcel.2017.08.019. Epub 2017 Sep 21.


DOI:10.1016/j.molcel.2017.08.019
PMID:28943311
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5659757/
Abstract

No-go decay (NGD) is a eukaryotic quality control mechanism that evolved to cope with translational arrests. The process is characterized by an endonucleolytic cleavage near the stall sequence, but the mechanistic details are unclear. Our analysis of cleavage sites indicates that cleavage requires multiple ribosomes on the mRNA. We also show that reporters harboring stall sequences near the initiation codon, which cannot accommodate multiple ribosomes, are not subject to NGD. Consistent with our model, we uncover an inverse correlation between ribosome density per mRNA and cleavage efficiency. Furthermore, promoting global ribosome collision in vivo resulted in ubiquitination of ribosomal proteins, suggesting that collision is sensed by the cell to initiate downstream quality control processes. Collectively, our data suggest that NGD and subsequent quality control are triggered by ribosome collision. This model provides insight into the regulation of quality control processes and the manner by which they reduce off-target effects.

摘要

无终止衰变(NGD)是一种真核生物质量控制机制,其进化是为了应对翻译停滞。该过程的特征是在停滞序列附近进行内切核酸酶切割,但具体的机制尚不清楚。我们对切割位点的分析表明,切割需要 mRNA 上的多个核糖体。我们还表明,在起始密码子附近带有停滞序列的报告基因不能容纳多个核糖体,因此不受 NGD 的影响。与我们的模型一致,我们发现每个 mRNA 的核糖体密度与切割效率呈反比。此外,在体内促进全局核糖体碰撞会导致核糖体蛋白的泛素化,这表明细胞通过碰撞来感知下游的质量控制过程。总之,我们的数据表明,NGD 和随后的质量控制是由核糖体碰撞引发的。该模型为质量控制过程的调控以及它们如何减少脱靶效应提供了思路。

相似文献

[1]
Ribosome Collision Is Critical for Quality Control during No-Go Decay.

Mol Cell. 2017-9-21

[2]
Ribosome Collisions Result in +1 Frameshifting in the Absence of No-Go Decay.

Cell Rep. 2019-8-13

[3]
Interactions between the mRNA and Rps3/uS3 at the entry tunnel of the ribosomal small subunit are important for no-go decay.

PLoS Genet. 2018-11-26

[4]
Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3' end of nonstop mRNA.

Sci Rep. 2016-6-17

[5]
Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways.

EMBO J. 2019-1-4

[6]
Mechanisms of Translation-coupled Quality Control.

J Mol Biol. 2024-3-15

[7]
Dom34:hbs1 plays a general role in quality-control systems by dissociation of a stalled ribosome at the 3' end of aberrant mRNA.

Mol Cell. 2012-4-11

[8]
The endonuclease Cue2 cleaves mRNAs at stalled ribosomes during No Go Decay.

Elife. 2019-6-20

[9]
No-Go Decay mRNA cleavage in the ribosome exit tunnel produces 5'-OH ends phosphorylated by Trl1.

Nat Commun. 2020-1-8

[10]
Translation drives mRNA quality control.

Nat Struct Mol Biol. 2012-6-5

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[2]
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[3]
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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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本文引用的文献

[1]
Asc1, Hel2, and Slh1 couple translation arrest to nascent chain degradation.

RNA. 2017-5

[2]
Translation of poly(A) tails leads to precise mRNA cleavage.

RNA. 2017-5

[3]
ZNF598 and RACK1 Regulate Mammalian Ribosome-Associated Quality Control Function by Mediating Regulatory 40S Ribosomal Ubiquitylation.

Mol Cell. 2017-2-16

[4]
Initiation of Quality Control during Poly(A) Translation Requires Site-Specific Ribosome Ubiquitination.

Mol Cell. 2017-2-16

[5]
Ribosome-associated Asc1/RACK1 is required for endonucleolytic cleavage induced by stalled ribosome at the 3' end of nonstop mRNA.

Sci Rep. 2016-6-17

[6]
Ribosome-based quality control of mRNA and nascent peptides.

Wiley Interdiscip Rev RNA. 2017-1

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Dynamics of Translation of Single mRNA Molecules In Vivo.

Cell. 2016-5-5

[8]
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Nat Struct Mol Biol. 2016-1

[9]
DNA repair, genome stability and cancer: a historical perspective.

Nat Rev Cancer. 2015-12-15

[10]
Inhibiting K63 polyubiquitination abolishes no-go type stalled translation surveillance in Saccharomyces cerevisiae.

PLoS Genet. 2015-4-24

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