Chaudhary Dhiraj Kumar, Kim Jaisoo
Department of Life Science, College of Natural Sciences, Kyonggi University, Suwon, Gyeonggi-Do 16227, Republic of Korea.
Int J Syst Evol Microbiol. 2017 Nov;67(11):4468-4474. doi: 10.1099/ijsem.0.002314. Epub 2017 Sep 27.
During a study of bacterial diversity in forest soil, strain G-3-2, a Gram-stain-negative, light brown-coloured, non-motile, rod- or coccoid-shaped bacterium, was isolated. It was able to grow at 15-37 °C, at pH 5.5-10.0 and at 0-0.5 % (w/v) NaCl concentration. The strain was taxonomically characterized by a polyphasic approach. Based on the 16S rRNA gene sequence analysis, strain G-3-2 belongs to the genus Ramlibacter and is closely related to Ramlibacter ginsenosidimutans BXN5-27 (98.69 % sequence similarity), Ramlibacter henchirensis TMB834 (96.98 %), Ramlibacter tataouinensis TTB310 (96.49 %) and Ramlibacter solisilvae 5-10 (96.42 %). The only respiratory quinone was ubiquinone-8. The major polar lipids were phosphatidylethanolamine, phosphatidylglycerol and diphosphatidylglycerol. The predominant fatty acids of strain G-3-2 were C16 : 0, summed feature 3 (C16 : 1ω7c and/or C16 : 1ω6c), C17 : 0 cyclo, summed feature 8 (C18 : 1ω7c and/or C18 : 1ω6c) and C10 : 0 3-OH. The genomic DNA G+C content of this novel strain was 68.9 mol%. The DNA-DNA relatedness between strain G-3-2 and R. ginsenosidimutans BXN5-27 was 44.7 %, which falls below the threshold value of 70 % for the strain to be considered as novel. The morphological, physiological, chemotaxonomic and phylogenetic analyses clearly distinguished this strain from its closest phylogenetic neighbours. Thus, strain G-3-2 represents a novel species of the genus Ramlibacter, for which the name Ramlibacter monticola sp. nov. is proposed. The type strain is G-3-2 (=KEMB 9005-573=KACC 19175=JCM 31918).
在一项关于森林土壤细菌多样性的研究中,分离出了菌株G-3-2,这是一种革兰氏染色阴性、浅棕色、不运动、杆状或球状的细菌。它能够在15-37°C、pH值5.5-10.0以及0-0.5%(w/v)NaCl浓度下生长。该菌株采用多相分类法进行分类鉴定。基于16S rRNA基因序列分析,菌株G-3-2属于Ramlibacter属,与人参皂苷转化菌Ramlibacter ginsenosidimutans BXN5-27(序列相似性为98.69%)、汉氏Ramlibacter henchirensis TMB834(96.98%)、塔陶因Ramlibacter tataouinensis TTB310(96.49%)和土壤Ramlibacter solisilvae 5-10(96.42%)密切相关。唯一的呼吸醌为泛醌-8。主要极性脂为磷脂酰乙醇胺、磷脂酰甘油和双磷脂酰甘油。菌株G-3-2的主要脂肪酸为C16:0、总和特征3(C16:1ω7c和/或C16:1ω6c)、C17:0环丙烷、总和特征8(C18:1ω7c和/或C18:1ω6c)和C10:0 3-OH。该新菌株的基因组DNA G+C含量为68.9 mol%。菌株G-3-2与人参皂苷转化菌R. ginsenosidimutans BXN5-27之间的DNA-DNA相关性为44.7%,低于将该菌株视为新物种所需的70%阈值。形态学、生理学、化学分类学和系统发育分析清楚地将该菌株与其最接近的系统发育邻居区分开来。因此,菌株G-3-2代表Ramlibacter属的一个新物种,为此提出名为Ramlibacter monticola sp. nov.。模式菌株为G-3-2(=KEMB 9005-573=KACC 19175=JCM 31918)。