Triana Sergio, de Cock Hans, Ohm Robin A, Danies Giovanna, Wösten Han A B, Restrepo Silvia, González Barrios Andrés F, Celis Adriana
Department of Biological Sciences, Universidad de los AndesBogotá, Colombia.
Grupo de Diseño de Productos y Procesos, Department of Chemical Engineering, Universidad de los AndesBogotá, Colombia.
Front Microbiol. 2017 Sep 14;8:1772. doi: 10.3389/fmicb.2017.01772. eCollection 2017.
species are lipophilic and lipid-dependent yeasts belonging to the human and animal microbiota. Typically, they are isolated from regions rich in sebaceous glands. They have been associated with dermatological diseases such as seborrheic dermatitis, pityriasis versicolor, atopic dermatitis, and folliculitis. The genomes of , , and lack the genes related to fatty acid synthesis. Here, the lipid-synthesis pathways of these species, as well as of , and of an atypical variant were reconstructed using genome data and Constraints Based Reconstruction and Analysis. To this end, the genomes of CBS 1878 and the atypical 4DS were sequenced and annotated. The resulting Enzyme Commission numbers and predicted reactions were similar to the other strains despite the differences in their genome size. Proteomic profiling was utilized to validate flux distributions. Flux differences were observed in the production of steroids in and in the metabolism of butanoate in . The predictions obtained via these metabolic reconstructions also suggested defects in the assimilation of palmitic acid in , , , and the atypical variant of , but not in These predictions were validated via physiological characterization, showing the predictive power of metabolic network reconstructions to provide new clues about the metabolic versatility of .
这些物种是亲脂性且依赖脂质的酵母,属于人类和动物微生物群。通常,它们是从皮脂腺丰富的区域分离出来的。它们与脂溢性皮炎、花斑癣、特应性皮炎和毛囊炎等皮肤病有关。某几种物种的基因组缺乏与脂肪酸合成相关的基因。在此,利用基因组数据以及基于约束的重建与分析方法,重建了这些物种以及另外几种物种和一种非典型变体的脂质合成途径。为此,对某物种CBS 1878和非典型变体4DS的基因组进行了测序和注释。尽管它们的基因组大小存在差异,但所得的酶委员会编号和预测反应与其他菌株相似。利用蛋白质组分析来验证通量分布。在某物种中观察到类固醇生成过程中的通量差异以及在另一物种中丁酸代谢过程中的通量差异。通过这些代谢重建获得的预测还表明,某几种物种以及该物种的非典型变体在棕榈酸同化方面存在缺陷,但另一物种没有。这些预测通过生理特征验证,显示了代谢网络重建在提供有关某物种代谢多样性新线索方面的预测能力。