从土壤样本中分离得到的一株重质原油降解及生物表面活性剂产生菌AS2的基因组序列草图
Draft Genome Sequence of AS2, a Heavy Crude Oil-Degrading and Biosurfactant-Producing Bacterium Isolated from a Soil Sample.
作者信息
Al-Sayegh Abdullah, Al-Wahaibi Yahya, Joshi Sanket, Al-Bahry Saif, Elshafie Abdulkadir, Al-Bemani Ali
机构信息
Department of Petroleum and Chemical Engineering, College of Engineering, Sultan Qaboos University, Muscat, Oman.
Department of Petroleum and Chemical Engineering, College of Engineering, Sultan Qaboos University, Muscat, Oman
出版信息
Genome Announc. 2017 Sep 28;5(39):e00969-17. doi: 10.1128/genomeA.00969-17.
Abstract
Here, we report the draft genome sequence of AS2 that was isolated from heavy crude oil-contaminated soil samples from sludge pits of an Omani heavy-oil field. AS2 was able to biodegrade heavy crude oil and produce biosurfactant. In order to provide a better understanding of the biodegradation mechanism and biosynthesis of metabolites, the AS2 genome was sequenced and compared to those of other strains.
摘要
在此，我们报告了AS2的基因组序列草图，AS2是从阿曼重油油田污泥坑中受重质原油污染的土壤样本中分离出来的。AS2能够生物降解重质原油并产生生物表面活性剂。为了更好地理解其生物降解机制和代谢产物的生物合成，我们对AS2的基因组进行了测序，并与其他菌株的基因组进行了比较。
相似文献
1
Draft Genome Sequence of AS2, a Heavy Crude Oil-Degrading and Biosurfactant-Producing Bacterium Isolated from a Soil Sample.
Genome Announc. 2017 Sep 28;5(39):e00969-17. doi: 10.1128/genomeA.00969-17.
2
Draft Genome Sequence of a Biosurfactant-Producing Bacillus subtilis UMX-103 Isolated from Hydrocarbon-Contaminated Soil in Terengganu, Malaysia.
Curr Microbiol. 2017 Jul;74(7):803-805. doi: 10.1007/s00284-017-1249-3. Epub 2017 Apr 17.
3
Genome annotation and comparative genomic analysis of Bacillus subtilis MJ01, a new bio-degradation strain isolated from oil-contaminated soil.
Funct Integr Genomics. 2018 Sep;18(5):533-543. doi: 10.1007/s10142-018-0604-1. Epub 2018 May 5.
4
Crude petroleum-oil biodegradation efficiency of Bacillus subtilis and Pseudomonas aeruginosa strains isolated from a petroleum-oil contaminated soil from North-East India.
Bioresour Technol. 2007 May;98(7):1339-45. doi: 10.1016/j.biortech.2006.05.032. Epub 2006 Jul 7.
5
Biosurfactant-producing and oil-degrading Bacillus subtilis strains enhance oil recovery in laboratory sand-pack columns.
J Hazard Mater. 2013 Oct 15;261:106-13. doi: 10.1016/j.jhazmat.2013.06.071. Epub 2013 Jul 8.
6
Biosurfactant and Degradative Enzymes Mediated Crude Oil Degradation by Bacterium A1.
Front Microbiol. 2017 Feb 9;8:193. doi: 10.3389/fmicb.2017.00193. eCollection 2017.
7
Production of biosurfactant by Bacillus subtilis RSL-2 isolated from sludge and biosurfactant mediated degradation of oil.
Bioresour Technol. 2020 Jul;307:123261. doi: 10.1016/j.biortech.2020.123261. Epub 2020 Mar 27.
8
Biodegradation of diesel oil by a novel microbial consortium: comparison between co-inoculation with biosurfactant-producing strain and exogenously added biosurfactants.
Environ Sci Pollut Res Int. 2015 Oct;22(19):14852-61. doi: 10.1007/s11356-015-4488-5. Epub 2015 May 22.
9
Microbial enhanced heavy crude oil recovery through biodegradation using bacterial isolates from an Omani oil field.
Microb Cell Fact. 2015 Sep 16;14:141. doi: 10.1186/s12934-015-0330-5.
10
Draft Genome Sequence of the Crude Oil-Degrading and Biosurfactant-Producing Strain sp. QF-1.
Genome Announc. 2018 Jan 18;6(3):e01456-17. doi: 10.1128/genomeA.01456-17.
引用本文的文献
1
Microbiota Landscape of Gut System of Guppy Fish () Plays an Outstanding Role in Adaptation Mechanisms.
Int J Microbiol. 2019 Feb 17;2019:3590584. doi: 10.1155/2019/3590584. eCollection 2019.
本文引用的文献
1
Microbial enhanced heavy crude oil recovery through biodegradation using bacterial isolates from an Omani oil field.
Microb Cell Fact. 2015 Sep 16;14:141. doi: 10.1186/s12934-015-0330-5.
2
Genome of a Gut Strain of Bacillus subtilis.
Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00184-12. Epub 2013 Feb 14.
3
Characterization and optimization of Bacillus subtilis ATCC 6051 as an expression host.
J Biotechnol. 2013 Jan 20;163(2):97-104. doi: 10.1016/j.jbiotec.2012.06.034. Epub 2012 Jul 10.
4
Whole-genome sequences of Bacillus subtilis and close relatives.
J Bacteriol. 2012 May;194(9):2378-9. doi: 10.1128/JB.05675-11.
5
Prodigal: prokaryotic gene recognition and translation initiation site identification.
BMC Bioinformatics. 2010 Mar 8;11:119. doi: 10.1186/1471-2105-11-119.
6
Velvet: algorithms for de novo short read assembly using de Bruijn graphs.
Genome Res. 2008 May;18(5):821-9. doi: 10.1101/gr.074492.107. Epub 2008 Mar 18.
7
Bacterial metabolism of long-chain n-alkanes.
Appl Microbiol Biotechnol. 2007 Oct;76(6):1209-21. doi: 10.1007/s00253-007-1119-1. Epub 2007 Aug 3.
8
KAAS: an automatic genome annotation and pathway reconstruction server.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W182-5. doi: 10.1093/nar/gkm321. Epub 2007 May 25.
9
The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Nature. 1997 Nov 20;390(6657):249-56. doi: 10.1038/36786.
Zotero 插件