Nadiya F, Anjali N, Thomas Jinu, Gangaprasad A, Sabu K K
Biotechnology and Bioinformatics Division, Jawaharlal Nehru Tropical Botanic Garden and Research Institute (JNTBGRI), Palode, Thiruvananthapuram 695562, India.
Department of Botany, University of Kerala, Thiruvananthapuram 695581, India.
Data Brief. 2017 Sep 5;14:789-792. doi: 10.1016/j.dib.2017.08.037. eCollection 2017 Oct.
(L.) Maton, or small cardamom referred as 'queen of spices', is a perennial herbaceous rhizomatous monocot of the family Zingiberaceae. Cardamom seeds and fruits are the economically significant parts and effectively used as a traditional medicine, food additive and flavoring agent. In the present study, using Ion Proton next generation sequencing technology we performed the small RNA sequencing, conserved and novel miRNA predictions of a wild and five cultivar genotypes of cardamom. Small RNA sequencing generated a total of 5,451,328 and 2,756,250 raw reads for wild and cultivar cardamom respectively. The raw data was submitted to SRA database of NCBI under the accession numbers and SRX2273863 (wild) and SRX2273862 (cultivars). The raw reads were quality filtered and predicted conserved and novel miRNAs for wild and cultivar cardamom. The predicted miRNAs, miRNA-targets and functional annotations might provide valuable insights into differences between wild progenitor and cultivated cardamom.
小豆蔻(L.),又称“香料之王”,是姜科多年生草本根茎类单子叶植物。小豆蔻的种子和果实是具有经济意义的部分,可有效用作传统药物、食品添加剂和调味剂。在本研究中,我们使用Ion Proton下一代测序技术对小豆蔻的一个野生基因型和五个栽培基因型进行了小RNA测序、保守和新miRNA预测。小RNA测序分别为野生小豆蔻和栽培小豆蔻产生了总共5,451,328和2,756,250条原始读数。原始数据已提交至NCBI的SRA数据库,登录号分别为SRX2273863(野生型)和SRX2273862(栽培型)。对原始读数进行了质量过滤,并预测了野生小豆蔻和栽培小豆蔻的保守和新miRNA。预测的miRNA、miRNA靶标和功能注释可能为野生祖先小豆蔻和栽培小豆蔻之间的差异提供有价值的见解。