Samsudin Firdaus, Boags Alister, Piggot Thomas J, Khalid Syma
School of Chemistry, University of Southampton, Highfield, Southampton, United Kingdom.
School of Chemistry, University of Southampton, Highfield, Southampton, United Kingdom; CBR Division, Defence Science and Technology Laboratory, Porton Down, Salisbury, Wiltshire, United Kingdom.
Biophys J. 2017 Oct 3;113(7):1496-1504. doi: 10.1016/j.bpj.2017.08.011.
Gram-negative bacteria such as Escherichia coli are protected by a complex cell envelope. The development of novel therapeutics against these bacteria necessitates a molecular level understanding of the structure-dynamics-function relationships of the various components of the cell envelope. We use atomistic MD simulations to reveal the details of covalent and noncovalent protein interactions that link the outer membrane to the aqueous periplasmic region. We show that the Braun's lipoprotein tilts and bends, and thereby lifts the cell wall closer to the outer membrane. Both monomers and dimers of the outer membrane porin OmpA can interact with peptidoglycan in the presence of Braun's lipoprotein, but in the absence of the latter, only dimers of OmpA show a propensity to form contacts with peptidoglycan. Our study provides a glimpse of how the molecular components of the bacterial cell envelope interact with each other to mediate cell wall attachment in E. coli.
革兰氏阴性菌,如大肠杆菌,被一层复杂的细胞包膜所保护。开发针对这些细菌的新型疗法需要从分子水平上理解细胞包膜各组分的结构-动力学-功能关系。我们使用原子尺度的分子动力学模拟来揭示将外膜与水性周质区域连接起来的共价和非共价蛋白质相互作用的细节。我们发现,布劳恩脂蛋白会倾斜和弯曲,从而使细胞壁更靠近外膜。在外膜孔蛋白OmpA的单体和二聚体在布劳恩脂蛋白存在的情况下都能与肽聚糖相互作用,但在没有布劳恩脂蛋白的情况下,只有OmpA的二聚体显示出与肽聚糖形成接触的倾向。我们的研究初步揭示了细菌细胞包膜的分子组分如何相互作用以介导大肠杆菌中的细胞壁附着。