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基于微阵列芯片技术的类风湿关节炎患者外周血单个核细胞环状 RNA 表达谱

Circular RNA expression profiles of peripheral blood mononuclear cells in rheumatoid arthritis patients, based on microarray chip technology.

机构信息

Clinical Medical Research Center, The Second Clinical Medical College of Jinan University, Shenzhen People's Hospital, Shenzhen, Guangdong 518020, P.R. China.

出版信息

Mol Med Rep. 2017 Dec;16(6):8029-8036. doi: 10.3892/mmr.2017.7638. Epub 2017 Sep 27.

Abstract

Rheumatoid arthritis (RA) is a systemic autoimmune disease characterized by chronic synovial inflammation and finally leads to variable degrees of bone and cartilage erosion. The diagnosis of RA is not an accurate indicator, but a series of scores and the mechanisms underlying it remain only partially understood. The present study explored whether circular RNAs (circRNAs) contribute to the RA pathophysiological mechanism. Total RNA from peripheral blood mononuclear cells of 10 RA patients and 10 healthy controls were extracted and circRNA expression profiling was followed by microarray analysis. In addition, circRNA interactions with microRNAs were performed and microRNA response elements were listed to identify differentially expressed binding site targets in RA. Reverse transcription‑quantitative polymerase chain reaction amplification (RT‑qPCR) was used to verify the differential expression of circRNAs. A total of 584 circRNAs were differentially expressed in RA patients vs. healthy controls, by circRNA microarray, including 255 circRNAs which were significantly upregulated and 329 downregulated among the RA samples. RT‑qPCR validation demonstrated that the expression levels of hsa_circRNA_104194, hsa_circRNA_104593, hsa_circRNA_103334, hsa_circRNA_101407 and hsa_circRNA_102594 were consistent with the results from the microarray analysis. The current study presented differentially expressed circRNAs and their corresponding microRNA binding sites in RA. circRNAs may exhibit a role in the regulation of expression of symbol genes that influence the occurrence and development of RA.

摘要

类风湿关节炎(RA)是一种以慢性滑膜炎症为特征的系统性自身免疫性疾病,最终导致不同程度的骨和软骨侵蚀。RA 的诊断不是一个准确的指标,但一系列评分及其潜在机制仍仅部分被理解。本研究探讨了环状 RNA(circRNA)是否有助于 RA 的病理生理机制。从 10 例 RA 患者和 10 例健康对照者的外周血单个核细胞中提取总 RNA,并进行 circRNA 表达谱分析和微阵列分析。此外,还进行了 circRNA 与 microRNA 的相互作用,并列出了 microRNA 反应元件,以鉴定 RA 中差异表达的结合位点靶标。逆转录-定量聚合酶链反应扩增(RT-qPCR)用于验证 circRNA 的差异表达。通过 circRNA 微阵列,在 RA 患者与健康对照者中,共发现 584 个 circRNA 存在差异表达,包括 255 个明显上调的 circRNA 和 329 个下调的 circRNA。RT-qPCR 验证表明,hsa_circRNA_104194、hsa_circRNA_104593、hsa_circRNA_103334、hsa_circRNA_101407 和 hsa_circRNA_102594 的表达水平与微阵列分析结果一致。本研究提出了 RA 中差异表达的 circRNA 及其相应的 microRNA 结合位点。circRNA 可能在调节影响 RA 发生和发展的符号基因的表达中发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3565/5779885/f24cdefb3def/MMR-16-06-8029-g00.jpg

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