从一名腹泻儿童中分离出的人畜共患G8P[14]轮状病毒株的检测及全基因组分析
Detection and Whole-Genome Analysis of a Zoonotic G8P[14] Rotavirus Strain Isolated from a Child with Diarrhea.
作者信息
Steyer Andrej, Naglič Tina, Jamnikar-Ciglenečki Urška, Kuhar Urška
机构信息
Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia
Institute of Microbiology and Immunology, Faculty of Medicine, University of Ljubljana, Ljubljana, Slovenia.
出版信息
Genome Announc. 2017 Oct 12;5(41):e01053-17. doi: 10.1128/genomeA.01053-17.
Abstract
The group A rotavirus strain SI-2987/09 was detected in a child with severe diarrhea. The whole-genome analysis revealed the G8-P[14]-I2-R2-C2-M2-A3-N2-T6-E2-H3 genome constellation, which reflects the zoonotic transmission of the strain most probably from the ungulate group. This was also confirmed by the high nucleotide identity to those animal rotavirus strains.
摘要
在一名患有严重腹泻的儿童中检测到A组轮状病毒SI-2987/09株。全基因组分析显示其基因组组合为G8-P[14]-I2-R2-C2-M2-A3-N2-T6-E2-H3，这很可能反映了该毒株最有可能来自动物有蹄类群体的人畜共患传播。与那些动物轮状病毒株的高核苷酸同一性也证实了这一点。
相似文献
1
Detection and Whole-Genome Analysis of a Zoonotic G8P[14] Rotavirus Strain Isolated from a Child with Diarrhea.从一名腹泻儿童中分离出的人畜共患G8P[14]轮状病毒株的检测及全基因组分析
Genome Announc. 2017 Oct 12;5(41):e01053-17. doi: 10.1128/genomeA.01053-17.
2
Full-length genome analysis of the first human G8P[14] rotavirus strain from Morocco suggests evidence of zoonotic transmission.对来自摩洛哥的首例人类G8P[14]轮状病毒株进行的全基因组分析表明存在人畜共患病传播的证据。
Virus Genes. 2019 Aug;55(4):465-478. doi: 10.1007/s11262-019-01677-9. Epub 2019 Jun 13.
3
Detection and Whole-Genome Characterization of a G8P[1] Group A Rotavirus Strain from Deer.从鹿中检测到的一株G8P[1]型A组轮状病毒毒株及其全基因组特征分析
Genome Announc. 2016 Dec 8;4(6):e01339-16. doi: 10.1128/genomeA.01339-16.
4
Whole genome sequence and a phylogenetic analysis of the G8P[14] group A rotavirus strain from roe deer.来自狍的G8P[14] A组轮状病毒株的全基因组序列及系统发育分析
BMC Vet Res. 2017 Nov 25;13(1):353. doi: 10.1186/s12917-017-1280-4.
5
Whole genome sequencing of a rare rotavirus from archived stool sample demonstrates independent zoonotic origin of human G8P[14] strains in Hungary.对一份存档粪便样本中一株罕见轮状病毒进行的全基因组测序表明，匈牙利人G8P[14]毒株具有独立的人畜共患病起源。
Virus Res. 2017 Jan 2;227:96-103. doi: 10.1016/j.virusres.2016.09.012. Epub 2016 Oct 10.
6
Whole genome sequencing and phylogenetic analysis of a zoonotic human G8P[14] rotavirus strain.对一株人源性 G8P[14] 轮状病毒的全基因组测序和系统进化分析。
Infect Genet Evol. 2010 Oct;10(7):1140-4. doi: 10.1016/j.meegid.2010.05.001. Epub 2010 May 13.
7
Whole genomic analysis of human and bovine G8P[1] rotavirus strains isolated in Nigeria provides evidence for direct bovine-to-human interspecies transmission.对在尼日利亚分离出的人类和牛源G8P[1]轮状病毒株进行的全基因组分析为牛与人之间的直接种间传播提供了证据。
Infect Genet Evol. 2016 Sep;43:424-33. doi: 10.1016/j.meegid.2016.06.023. Epub 2016 Jun 11.
8
Full genomic characterization and phylogenetic analysis of a zoonotic human G8P[14] rotavirus strain detected in a sample from Guatemala.对在危地马拉一份样本中检测到的一种人畜共患的人G8P[14]轮状病毒株进行全基因组特征分析和系统发育分析。
Infect Genet Evol. 2015 Jul;33:206-11. doi: 10.1016/j.meegid.2015.05.004. Epub 2015 May 5.
9
Whole genome sequence analyses of three African bovine rotaviruses reveal that they emerged through multiple reassortment events between rotaviruses from different mammalian species.对三种非洲牛轮状病毒的全基因组序列分析表明，它们是通过来自不同哺乳动物物种的轮状病毒之间的多次重配事件产生的。
Vet Microbiol. 2012 Sep 14;159(1-2):245-50. doi: 10.1016/j.vetmic.2012.03.040. Epub 2012 Apr 6.
10
Detection and molecular characterization of two rare G8P[14] and G3P[3] rotavirus strains collected from children with acute gastroenteritis in Japan.从日本急性肠胃炎儿童中分离到的两株罕见 G8P[14]和 G3P[3]轮状病毒的检测和分子特征。
Infect Genet Evol. 2018 Aug;62:95-108. doi: 10.1016/j.meegid.2018.04.011. Epub 2018 Apr 12.
引用本文的文献
1
Full genome characterization of a Kenyan G8P[14] rotavirus strain suggests artiodactyl-to-human zoonotic transmission.一株肯尼亚G8P[14]轮状病毒株的全基因组特征表明偶蹄动物到人的人畜共患病传播。
Trop Med Health. 2025 Jun 16;53(1):82. doi: 10.1186/s41182-025-00759-9.
2
Genomic revelations: investigating rotavirus a presence in wild ruminants and its zoonotic potential.基因组揭示：调查野生反刍动物中轮状病毒A的存在及其人畜共患病潜力。
Front Vet Sci. 2024 Aug 15;11:1429654. doi: 10.3389/fvets.2024.1429654. eCollection 2024.
3
Epidemiological study of unusual rotavirus strains and molecular characterization of emerging P[14] strains isolated from children with acute gastroenteritis during a 15-year period.15 年间，对急性肠胃炎儿童中分离出的不常见轮状病毒株的流行病学研究及新兴 P[14]株的分子特征
Arch Virol. 2023 May 2;168(5):149. doi: 10.1007/s00705-023-05769-8.
4
Rapid detection of bovine rotavirus a by isothermal reverse transcription recombinase polymerase amplification assays.用等温逆转录重组酶聚合酶扩增法快速检测牛轮状病毒 A。
BMC Vet Res. 2022 Sep 8;18(1):339. doi: 10.1186/s12917-022-03437-8.
5
Viromic Analysis of Wastewater Input to a River Catchment Reveals a Diverse Assemblage of RNA Viruses.对河流集水区污水输入的病毒组分析揭示了RNA病毒的多样组合。
mSystems. 2018 May 22;3(3). doi: 10.1128/mSystems.00025-18. eCollection 2018 May-Jun.
本文引用的文献
1
Complete Genome of Chronic Bee Paralysis Virus Strain SLO/M92/2010, Detected from .从……中检测到的慢性蜜蜂麻痹病毒株SLO/M92/2010的全基因组
Genome Announc. 2017 Jun 29;5(26):e00602-17. doi: 10.1128/genomeA.00602-17.
2
The first detection and whole genome characterization of the G6P[15] group A rotavirus strain from roe deer.首次从狍中检测到G6P[15] 型A组轮状病毒株并进行全基因组特征分析。
Vet Microbiol. 2016 Aug 15;191:52-9. doi: 10.1016/j.vetmic.2016.05.019. Epub 2016 May 27.
3
Global, Regional, and National Estimates of Rotavirus Mortality in Children <5 Years of Age, 2000-2013.全球、区域和国家 2000-2013 年轮状病毒<5 岁儿童死亡率估计。
Clin Infect Dis. 2016 May 1;62 Suppl 2(Suppl 2):S96-S105. doi: 10.1093/cid/civ1013.
4
Whole genome sequence analysis of bovine G6P[11] rotavirus strain found in a child with gastroenteritis.牛 G6P[11]轮状病毒株全基因组序列分析，该病毒株在一名胃肠炎患儿中被发现。
Infect Genet Evol. 2013 Jan;13:89-95. doi: 10.1016/j.meegid.2012.09.004. Epub 2012 Sep 18.
5
Molecular analysis of human group A rotavirus G10P[14] genotype in Slovenia.斯洛文尼亚 A 组人轮状病毒 G10P[14]基因型的分子分析。
J Clin Virol. 2010 Oct;49(2):121-5. doi: 10.1016/j.jcv.2010.07.003. Epub 2010 Aug 2.
6
Zoonotic aspects of rotaviruses.轮状病毒的动物源性方面。
Vet Microbiol. 2010 Jan 27;140(3-4):246-55. doi: 10.1016/j.vetmic.2009.08.028. Epub 2009 Aug 28.
7
Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment.斯洛文尼亚的人、猪和牛轮状病毒：种间传播和基因组重配的证据
J Gen Virol. 2008 Jul;89(Pt 7):1690-1698. doi: 10.1099/vir.0.2008/001206-0.
8
Rotavirus genotypes in Slovenia: unexpected detection of G8P[8] and G12P[8] genotypes.斯洛文尼亚的轮状病毒基因型：意外检测到G8P[8]和G12P[8]基因型。
J Med Virol. 2007 May;79(5):626-32. doi: 10.1002/jmv.20811.
Zotero 插件