Department of Genetics, Evolution and Environment, University College London, Gower Street, London WC1E 6BT, UK.
Centre for Computation, Mathematics and Physics in the Life Sciences and Experimental Biology (CoMPLEX), University College London, Gower Street, London WC1E 6BT, UK.
Philos Trans R Soc Lond B Biol Sci. 2017 Dec 5;372(1735). doi: 10.1098/rstb.2016.0419.
Here we develop a computational model that examines one of the first major biological innovations-the origin of heredity in simple protocells. The model assumes that the earliest protocells were autotrophic, producing organic matter from CO and H Carbon fixation was facilitated by geologically sustained proton gradients across fatty acid membranes, via iron-sulfur nanocrystals lodged within the membranes. Thermodynamic models suggest that organics formed this way should include amino acids and fatty acids. We assume that fatty acids partition to the membrane. Some hydrophobic amino acids chelate FeS nanocrystals, producing three positive feedbacks: (i) an increase in catalytic surface area; (ii) partitioning of FeS nanocrystals to the membrane; and (iii) a proton-motive active site for carbon fixing that mimics the enzyme Ech. These positive feedbacks enable the fastest-growing protocells to dominate the early ecosystem through a simple form of heredity. We propose that as new organics are produced inside the protocells, the localized high-energy environment is more likely to form ribonucleotides, linking RNA replication to its ability to drive protocell growth from the beginning. Our novel conceptualization sets out conditions under which protocell heredity and competition could arise, and points to where crucial experimental work is required.This article is part of the themed issue 'Process and pattern in innovations from cells to societies'.
在这里,我们开发了一个计算模型,研究了最早的生物学创新之一——简单原细胞中遗传的起源。该模型假设最早的原细胞是自养的,从 CO 和 H 中产生有机物质。碳固定是通过铁硫纳米晶体在脂肪酸膜内的存在,在地质上维持的质子梯度来促进的。热力学模型表明,以这种方式形成的有机物应该包括氨基酸和脂肪酸。我们假设脂肪酸会分配到膜上。一些疏水性氨基酸螯合铁硫纳米晶体,产生三个正反馈:(i)增加催化表面积;(ii)铁硫纳米晶体向膜的分配;(iii)一个质子动力活跃的碳固定位点,模拟酶 Ech。这些正反馈使生长最快的原细胞通过一种简单的遗传方式在早期生态系统中占主导地位。我们提出,随着新有机物在原细胞内产生,局部的高能环境更有可能形成核苷酸,将 RNA 复制与其从一开始就驱动原细胞生长的能力联系起来。我们的新概念阐述了原细胞遗传和竞争可能出现的条件,并指出了需要进行关键实验的地方。本文是“从细胞到社会的创新中的过程和模式”主题特刊的一部分。