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一种新型四lncRNA特征作为人类胃癌预后生物标志物的综合分析

Comprehensive analysis of a novel four-lncRNA signature as a prognostic biomarker for human gastric cancer.

作者信息

Miao Yan, Sui Jing, Xu Si-Yi, Liang Ge-Yu, Pu Yue-Pu, Yin Li-Hong

机构信息

Key Laboratory of Environmental Medicine Engineering, Ministry of Education, School of Public Health, Southeast University, Nanjing, Jiangsu 210009, P.R. China.

出版信息

Oncotarget. 2017 Aug 24;8(43):75007-75024. doi: 10.18632/oncotarget.20496. eCollection 2017 Sep 26.

Abstract

Emerging evidence indicates that long non-coding RNAs (lncRNAs) play a crucial role in predicting survival for gastric cancer (GC) patients. This study aims to identify a lncRNA-related signature for evaluating the overall survival of 379 GC patients from The Cancer Genome Atlas (TCGA) database. The associations between survival outcome and the expression of lncRNAs were evaluated by the univariate and multivariate Cox proportional hazards regression analyses. Four lncRNAs (LINC01018, LOC553137, MIR4435-2HG, and TTTY14) were identified as significantly correlated with overall survival. These four lncRNAs were gathered as a single prognostic signature. There was a significant positive correlation between GC patients with low-risk scores and overall survival (P = 0.001). Further analysis suggested that the prognostic value of this four-lncRNA signature was independent in clinical features. Gene set enrichment analysis found that these four lncRNAs were correlated with several molecular pathways of the tumor. Our study indicates that this novel lncRNA expression signature may be a useful biomarker of the prognosis for GC patients, based on bioinformatics analysis.

摘要

新出现的证据表明,长链非编码RNA(lncRNA)在预测胃癌(GC)患者的生存方面起着关键作用。本研究旨在从癌症基因组图谱(TCGA)数据库中识别一种与lncRNA相关的特征,以评估379例GC患者的总生存期。通过单变量和多变量Cox比例风险回归分析评估生存结果与lncRNA表达之间的关联。鉴定出四个lncRNA(LINC01018、LOC553137、MIR4435-2HG和TTTY14)与总生存期显著相关。这四个lncRNA被整合为一个单一的预后特征。低风险评分的GC患者与总生存期之间存在显著正相关(P = 0.001)。进一步分析表明,这个四lncRNA特征的预后价值在临床特征方面是独立的。基因集富集分析发现这四个lncRNA与肿瘤的几个分子途径相关。我们的研究表明,基于生物信息学分析,这种新的lncRNA表达特征可能是GC患者预后的一个有用生物标志物。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a84/5650396/dcc7bbddb539/oncotarget-08-75007-g001.jpg

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