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使用分布式点电荷的极化多极分子动力学。

Polarizable Multipolar Molecular Dynamics Using Distributed Point Charges.

机构信息

Department of Chemistry, University of Basel, Klingelbergstrasse 80, CH-4056 Basel, Switzerland.

Department of Chemistry, Brown University, Providence, Rhode Island 02912, United States.

出版信息

J Chem Theory Comput. 2020 Dec 8;16(12):7267-7280. doi: 10.1021/acs.jctc.0c00883. Epub 2020 Nov 27.

DOI:10.1021/acs.jctc.0c00883
PMID:33245239
Abstract

Distributed point charge models (DCM) and their minimal variants (MDCM) have been integrated with tools widely used for condensed-phase simulations, including a virial-based barostat and a slow-growth algorithm for thermodynamic integration. Minimal DCM is further developed in a systematic fashion to reduce fitting errors in the electrostatic interaction energy, and a new fragment-based approach offers considerable speedup of the MDCM fitting process for larger molecules with increased numbers of off-centered charged sites. Finally, polarizable (M)DCM is also introduced in the present work. The developments are used in condensed-phase simulations of popular force fields with commonly applied simulation conditions. (M)DCM equivalents for a range of widely used water force fields and for fluorobenzene (PhF) are developed and applied along with the original models to evaluate the impact of reformulating the electrostatic term. Comparisons of the molecular electrostatic potential (MEP), electrostatic interaction energies, and bulk properties from molecular dynamics simulations for a range of models from simple TIPP ( = 3-5) to the polarizable, multipolar iAMOEBA models for water and an existing quadrupolar model for PhF confirm that DCMs retain the accuracy of the original models, providing a homogeneous, efficient, and generic point charge alternative to a multipolar electrostatic model for force field development and multilevel simulations.

摘要

分布点电荷模型(DCM)及其最小变体(MDCM)已与广泛用于凝聚相模拟的工具集成在一起,包括基于 virial 的压力计和用于热力学积分的缓慢增长算法。最小 DCM 以系统的方式进一步发展,以减少静电相互作用能中的拟合误差,并且新的基于片段的方法为具有增加的偏心带电位点数量的较大分子的 MDCM 拟合过程提供了相当大的加速。最后,本文还引入了极化(M)DCM。这些开发用于具有常用模拟条件的流行力场的凝聚相模拟。(M)DCM 等效物用于一系列广泛使用的水力场和氟苯(PhF),并与原始模型一起应用,以评估重新制定静电项的影响。对一系列模型的分子静电势(MEP)、静电相互作用能和分子动力学模拟的体性质的比较,这些模型从简单的 TIPP(=3-5)到水的极化、多极 iAMOEBA 模型和现有的用于 PhF 的四极模型,证实 DCM 保留了原始模型的准确性,为力场开发和多层次模拟提供了一种同质、高效、通用的点电荷替代多极静电模型。

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