Singh Rajesh, Guzman Michael S, Bose Arpita
Department of Biology, Washington University in St. Louis, St. Louis, MO, United States.
Front Microbiol. 2017 Oct 23;8:2056. doi: 10.3389/fmicb.2017.02056. eCollection 2017.
The deep ocean and its sediments are a continuous source of non-methane short-chain alkanes (SCAs) including ethane, propane, and butane. Their high global warming potential, and contribution to local carbon and sulfur budgets has drawn significant scientific attention. Importantly, microbes can use gaseous alkanes and oxidize them to CO, thus acting as effective biofilters. A relative decrease of these gases with a concomitant C enrichment of propane and -butane in interstitial waters vs. the source suggests microbial anaerobic oxidation. The reported uncoupling of sulfate-reduction (SR) from anaerobic methane oxidation supports their microbial consumption. To date, strain BuS5 isolated from the sediments of Guaymas Basin, Gulf of California, is the only pure culture that can anaerobically degrade propane and -butane. This organism belongs to a metabolically diverse cluster within the called . Other phylotypes involved in gaseous alkane degradation were identified based on stable-isotope labeling and fluorescence hybridization. A novel syntrophic association of the archaeal genus, , and a thermophilic SR bacterium, HotSeep-1 was recently discovered from the Guaymas basin, Gulf of California that can anaerobically oxidize -butane. Strikingly, metagenomic data and the draft genomes of suggest that this organism uses a novel mechanism for -butane oxidation, distinct from the well-established fumarate addition mechanism. These recent findings indicate that a lot remains to be understood about our understanding of anaerobic SCA degradation. This mini-review summarizes our current understanding of microbial anaerobic SCA degradation, and provides an outlook for future research.
深海及其沉积物是乙烷、丙烷和丁烷等非甲烷短链烷烃(SCA)的持续来源。它们具有很高的全球变暖潜能,并且对局部碳和硫收支有贡献,这引起了科学界的广泛关注。重要的是,微生物可以利用气态烷烃并将其氧化为二氧化碳,从而起到有效的生物过滤器的作用。与源相比,间隙水中这些气体相对减少,同时丙烷和丁烷的碳含量增加,这表明存在微生物厌氧氧化。据报道,硫酸盐还原(SR)与厌氧甲烷氧化解偶联支持了它们的微生物消耗。迄今为止,从加利福尼亚湾瓜伊马斯盆地的沉积物中分离出的菌株BuS5是唯一能够厌氧降解丙烷和丁烷的纯培养物。这种生物属于称为的代谢多样的类群。基于稳定同位素标记和荧光原位杂交鉴定了参与气态烷烃降解的其他系统发育型。最近从加利福尼亚湾瓜伊马斯盆地发现了古菌属和嗜热SR细菌HotSeep-1的一种新型共生关系,它们可以厌氧氧化丁烷。引人注目的是,宏基因组数据和的草图基因组表明,这种生物使用一种与成熟的富马酸酯加成机制不同的新型丁烷氧化机制。这些最新发现表明,我们对厌氧SCA降解的理解仍有许多有待了解之处。这篇小型综述总结了我们目前对微生物厌氧SCA降解的理解,并对未来研究进行了展望。