Frye Stephan A, Beyene Getachew Tesfaye, Namouchi Amine, Gómez-Muñoz Marta, Homberset Håvard, Kalayou Shewit, Riaz Tahira, Tønjum Tone, Balasingham Seetha V
Department of Microbiology, Oslo University Hospital, Oslo, Norway.
Department of Microbiology, University of Oslo, Oslo, Norway.
PLoS One. 2017 Nov 9;12(11):e0187900. doi: 10.1371/journal.pone.0187900. eCollection 2017.
Neisseria meningitidis (Nm) is a Gram-negative nasopharyngeal commensal that can cause septicaemia and meningitis. The neisserial DNA damage-inducible protein DinG is a helicase related to the mammalian helicases XPD and FANCJ. These helicases belong to superfamily 2, are ATP dependent and exert 5' → 3' directionality. To better understand the role of DinG in neisserial genome maintenance, the Nm DinG (DinGNm) enzymatic activities were assessed in vitro and phenotypical characterization of a dinG null mutant (NmΔdinG) was performed. Like its homologues, DinGNm possesses 5' → 3' directionality and prefers DNA substrates containing a 5'-overhang. ATPase activity of DinGNm is strictly DNA-dependent and DNA unwinding activity requires nucleoside triphosphate and divalent metal cations. DinGNm directly binds SSBNm with a Kd of 313 nM. Genotoxic stress analysis demonstrated that NmΔdinG was more sensitive to double-strand DNA breaks (DSB) induced by mitomycin C (MMC) than the Nm wildtype, defining the role of neisserial DinG in DSB repair. Notably, when NmΔdinG cells grown under MMC stress assessed by quantitative mass spectrometry, 134 proteins were shown to be differentially abundant (DA) compared to unstressed NmΔdinG cells. Among the DNA replication, repair and recombination proteins affected, polymerase III subunits and recombinational repair proteins RuvA, RuvB, RecB and RecD were significantly down regulated while TopA and SSB were upregulated under stress condition. Most of the other DA proteins detected are involved in metabolic functions. The present study shows that the helicase DinG is probably involved in regulating metabolic pathways as well as in genome maintenance.
脑膜炎奈瑟菌(Nm)是一种革兰氏阴性鼻咽共生菌,可导致败血症和脑膜炎。奈瑟菌DNA损伤诱导蛋白DinG是一种解旋酶,与哺乳动物解旋酶XPD和FANCJ相关。这些解旋酶属于超家族2,依赖ATP并具有5'→3'方向性。为了更好地理解DinG在奈瑟菌基因组维持中的作用,对Nm DinG(DinGNm)的酶活性进行了体外评估,并对dinG基因缺失突变体(NmΔdinG)进行了表型特征分析。与它的同源物一样,DinGNm具有5'→3'方向性,并更喜欢含有5'端突出的DNA底物。DinGNm的ATP酶活性严格依赖于DNA,DNA解旋活性需要核苷三磷酸和二价金属阳离子。DinGNm以313 nM的解离常数直接结合SSBNm。遗传毒性应激分析表明,NmΔdinG比Nm野生型对丝裂霉素C(MMC)诱导的双链DNA断裂(DSB)更敏感,这确定了奈瑟菌DinG在DSB修复中的作用。值得注意的是,当通过定量质谱法评估在MMC应激下生长的NmΔdinG细胞时,与未受应激的NmΔdinG细胞相比,有134种蛋白质显示出差异丰富(DA)。在受影响的DNA复制、修复和重组蛋白中,聚合酶III亚基以及重组修复蛋白RuvA、RuvB、RecB和RecD在应激条件下显著下调,而TopA和SSB则上调。检测到的大多数其他DA蛋白参与代谢功能。本研究表明,解旋酶DinG可能参与调节代谢途径以及基因组维持。