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融合玫瑰杆菌新种,从河口分离得到。

Albirhodobacter confluentis sp. nov., isolated from an estuary.

作者信息

Jung Hye Su, Lee Jaegeun, Hyeon Jong Woo, Hyun Seogang, Jeon Che Ok

机构信息

Department of Life Science, Chung-Ang University, Seoul 06974, Republic of Korea.

出版信息

Int J Syst Evol Microbiol. 2018 Jan;68(1):289-293. doi: 10.1099/ijsem.0.002499. Epub 2017 Nov 17.

Abstract

A Gram-stain-negative and strictly aerobic, moderately halophilic bacterium, designated strain S1-47, was isolated from estuary sediment in South Korea. Cells were non-motile rods showing oxidase- and catalase-positive activities. Growth was observed at 10-30 °C (optimum, 25 °C), at pH 5.0-8.0 (optimum, pH 6.0-7.0) and in the presence of 0-6.0 % (w/v) NaCl (optimum, 2.0 %). Strain S1-47 contained summed feature 3 (comprising C16 : 1ω7c and/or C16 : 1ω6c), summed feature 8 (comprising C18 : 1ω7c and/or C18 : 1ω6c) and C16 : 0 as major cellular fatty acids and ubiquinone-10 as the sole isoprenoid quinone. Phosphatidylethanolamine, an unidentified aminolipid, an unidentified phospholipid and three unidentified lipids were detected as polar lipids. The G+C content of the genomic DNA was 69.3 mol%. Phylogenetic analysis based on 16S rRNA gene sequences showed that strain S1-47 formed a tight phylogenetic lineage with Albirhodobacter marinus N9. Strain S1-47 was most closely related to Albirhodobactermarinus N9 with a 99.4 % 16S rRNA gene sequence similarity. DNA-DNA relatedness levels between strain S1-47 and the type strain of Albirhodobactermarinus were 49.8-52.2 %. Based on the phenotypic, chemotaxonomic and molecular features, strain S1-47 clearly represents a novel species of the genus Albirhodobacter, for which the name Albirhodobacter confluentis sp. nov. is proposed. The type strain is S1-47 (=KACC 18804=JCM 31536).

摘要

从韩国河口沉积物中分离出一株革兰氏染色阴性、严格需氧、中度嗜盐的细菌,命名为菌株S1-47。细胞为无运动性的杆状,氧化酶和过氧化氢酶呈阳性。在10-30°C(最适温度25°C)、pH 5.0-8.0(最适pH 6.0-7.0)和0-6.0%(w/v)NaCl(最适浓度2.0%)条件下可生长。菌株S1-47的主要细胞脂肪酸为总和特征3(包含C16:1ω7c和/或C16:1ω6c)、总和特征8(包含C18:1ω7c和/或C18:1ω6c)以及C16:0,唯一的类异戊二烯醌为泛醌-10。检测到的极性脂质有磷脂酰乙醇胺、一种未鉴定的氨基脂质、一种未鉴定的磷脂和三种未鉴定的脂质。基因组DNA的G+C含量为69.3 mol%。基于16S rRNA基因序列的系统发育分析表明,菌株S1-47与海栖白红杆菌N9形成了紧密的系统发育谱系。菌株S1-47与海栖白红杆菌N9的16S rRNA基因序列相似度最高,为99.4%。菌株S1-47与海栖白红杆菌模式菌株的DNA-DNA相关性水平为49.8-52.2%。基于表型、化学分类学和分子特征,菌株S1-47明显代表了白红杆菌属的一个新物种,为此提出新名称融合白红杆菌(Albirhodobacter confluentis sp. nov.)。模式菌株为S1-47(=KACC 18804=JCM 31536)。

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