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用丙氨酸对RNA小螺旋进行氨酰化。

Aminoacylation of RNA minihelices with alanine.

作者信息

Francklyn C, Schimmel P

机构信息

Department of Biology, Massachusetts Institute of Technology, Cambridge 02139.

出版信息

Nature. 1989 Feb 2;337(6206):478-81. doi: 10.1038/337478a0.

DOI:10.1038/337478a0
PMID:2915692
Abstract

The genetic code is determined by both the specificity of the triplet anticodon of tRNAs for codons in mRNAs and the specificity with which tRNAs are charged with amino acids. The latter depends on interactions between tRNAs and their charging enzymes, and an advance in understanding such interactions was provided recently by the demonstration that a major determinant of the identity of alanine tRNA is located in the amino-acid acceptor helix. Multiple substitutions in many distinct parts of the molecule do not prevent aminoacylation with alanine. Substitution of the G3.U70 base pair with G3.C70 or A3.U70 in the acceptor helix prevents aminoacylation in vivo and in vitro, however, and the introduction of this base pair into tRNA(Cys) (ref. 1) or tRNA(Phe) (refs 1, 2) enables both to accept alanine. The importance of a single base pair in the acceptor helix and the results of recent footprinting experiments promoted us to investigate the possibility that a minihelix, composed only of the amino-acid acceptor-T psi C helix, could be a substrate for alanine tRNA synthetase. We show here that a synthetic hairpin minihelix can be enzymatically aminoacylated with alanine. Alanine incorporation requires a single G.U base pair, and occurs in helices that otherwise differ significantly in sequence. Aminoacylation can be achieved with only seven base pairs in the helix.

摘要

遗传密码由tRNA三联体反密码子对mRNA密码子的特异性以及tRNA负载氨基酸的特异性共同决定。后者取决于tRNA与其负载酶之间的相互作用,最近的一项研究为理解这种相互作用带来了进展,该研究表明丙氨酸tRNA身份的一个主要决定因素位于氨基酸接受螺旋中。分子许多不同部位的多个替换并不妨碍用丙氨酸进行氨基酰化。然而,在接受螺旋中将G3.U70碱基对替换为G3.C70或A3.U70会阻止体内和体外的氨基酰化,并且将这个碱基对引入tRNA(Cys)(参考文献1)或tRNA(Phe)(参考文献1、2)能使二者都接受丙氨酸。接受螺旋中单个碱基对的重要性以及最近足迹实验的结果促使我们研究仅由氨基酸接受 - TψC螺旋组成的小螺旋可能成为丙氨酸tRNA合成酶底物的可能性。我们在此表明,一种合成发夹小螺旋可以被丙氨酸酶促氨基酰化。丙氨酸掺入需要一个单一的G.U碱基对,并且发生在序列上有显著差异的螺旋中。仅用螺旋中的七个碱基对就能实现氨基酰化。

相似文献

1
Aminoacylation of RNA minihelices with alanine.用丙氨酸对RNA小螺旋进行氨酰化。
Nature. 1989 Feb 2;337(6206):478-81. doi: 10.1038/337478a0.
2
Specificity for aminoacylation of an RNA helix: an unpaired, exocyclic amino group in the minor groove.RNA螺旋氨基酰化的特异性:小沟中一个未配对的环外氨基。
Science. 1991 Aug 16;253(5021):784-6. doi: 10.1126/science.1876835.
3
A single base pair affects binding and catalytic parameters in the molecular recognition of a transfer RNA.单个碱基对影响转运RNA分子识别中的结合和催化参数。
Biochemistry. 1989 Mar 21;28(6):2740-6. doi: 10.1021/bi00432a056.
4
Evidence that a major determinant for the identity of a transfer RNA is conserved in evolution.有证据表明,转运RNA身份的一个主要决定因素在进化过程中是保守的。
Biochemistry. 1989 Aug 22;28(17):6800-4. doi: 10.1021/bi00443a003.
5
A nucleotide that enhances the charging of RNA minihelix sequence variants with alanine.一种增强RNA小螺旋序列变体与丙氨酸负载的核苷酸。
Biochemistry. 1990 Apr 17;29(15):3621-6. doi: 10.1021/bi00467a005.
6
Enzymatic aminoacylation of an eight-base-pair microhelix with histidine.用组氨酸对一个八碱基对微螺旋进行酶促氨酰化反应。
Proc Natl Acad Sci U S A. 1990 Nov;87(21):8655-9. doi: 10.1073/pnas.87.21.8655.
7
Characterization of some major identity elements in plant alanine and phenylalanine transfer RNAs.植物丙氨酸和苯丙氨酸转运RNA中一些主要识别元件的表征
Plant Mol Biol. 1994 Dec;26(6):1843-53. doi: 10.1007/BF00019497.
8
Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition.大肠杆菌丙氨酸转运RNA受体茎的结构:G3.U70碱基对在合成酶识别中的作用
Nucleic Acids Res. 1997 Jun 1;25(11):2083-90. doi: 10.1093/nar/25.11.2083.
9
Aminoacylation of alanine minihelices. "Discriminator" base modulates transition state of single turnover reaction.丙氨酸小螺旋的氨基酰化。“鉴别”碱基调节单轮反应的过渡态。
J Biol Chem. 1991 Feb 15;266(5):2705-8.
10
G:U-Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl-tRNA Synthetase: An Insight into the Evolution of Aminoacyl-tRNA Synthetases.古生菌 Nanoarchaeum equitans 丙氨酰-tRNA 合成酶对 U 独立 RNA 小发夹氨酰化:对氨酰-tRNA 合成酶进化的深入了解。
J Mol Evol. 2020 Aug;88(6):501-509. doi: 10.1007/s00239-020-09945-1. Epub 2020 May 7.

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