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热稳定 G-四链体结构在反转回旋酶作用下转化为 DNA 双链。

Transformation of a Thermostable G-Quadruplex Structure into DNA Duplex Driven by Reverse Gyrase.

机构信息

Key Lab of Forest Genetics and Biotechnology, Nanjing Forestry University, 159 Longpan Road, Nanjing 210037, China.

Jiangsu Key Laboratory for Biofunctional Molecules, College of Life Science and Chemistry, Jiangsu Second Normal University, Nanjing 210037, China.

出版信息

Molecules. 2017 Nov 22;22(11):2021. doi: 10.3390/molecules22112021.

DOI:10.3390/molecules22112021
PMID:29165328
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6150213/
Abstract

Reverse gyrase is a topoisomerase that can introduce positive supercoils to its substrate DNA. It is demonstrated in our studies that a highly thermal stable G-quadruplex structure in a mini-plasmid DNA was transformed into its duplex conformation after a treatment with reverse gyrase. The structural difference of the topoisomers were verified and analyzed by gel electrophoresis, atomic force microscopy examination, and endonuclease digestion assays. All evidence suggested that the overwinding structure of positive supercoil could provide a driven force to disintegrate G-quadruplex and reform duplex. The results of our studies could suggest that hyperthermophiles might use reverse gyrase to manipulate the disintegration of non-B DNA structures and safekeep their genomic information.

摘要

反转酶是一种拓扑异构酶,能够将正超螺旋引入其底物 DNA。我们的研究表明,经反转酶处理后,小型质粒 DNA 中的高度热稳定 G-四链体结构转变为双链构象。通过凝胶电泳、原子力显微镜检查和内切酶消化实验验证和分析了拓扑异构体的结构差异。所有证据都表明,正超螺旋的过度缠绕结构可以提供驱动力来破坏 G-四链体并形成双链。我们的研究结果表明,嗜热微生物可能利用反转酶来操纵非 B 型 DNA 结构的解体并保护其基因组信息。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/794b895b613c/molecules-22-02021-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/4e8d196de4ce/molecules-22-02021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/568a8adc8198/molecules-22-02021-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/4984307662fd/molecules-22-02021-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/51d7918e8f65/molecules-22-02021-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/794b895b613c/molecules-22-02021-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/4e8d196de4ce/molecules-22-02021-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/568a8adc8198/molecules-22-02021-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/4984307662fd/molecules-22-02021-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/51d7918e8f65/molecules-22-02021-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2b5c/6150213/794b895b613c/molecules-22-02021-g005.jpg

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本文引用的文献

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Direct observation of positive supercoils introduced by reverse gyrase through atomic force microscopy.通过原子力显微镜直接观察反向回旋酶引入的正超螺旋。
Bioorg Med Chem Lett. 2017 Sep 1;27(17):4086-4090. doi: 10.1016/j.bmcl.2017.07.044. Epub 2017 Jul 15.
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G-Quadruplex surveillance in BCL-2 gene: a promising therapeutic intervention in cancer treatment.BCL-2 基因中的 G-四链体监测:癌症治疗中一种有前途的治疗干预手段。
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Effects of DNA supercoiling on chromatin architecture.
DNA超螺旋对染色质结构的影响。
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Imaging DNA Structure by Atomic Force Microscopy.用原子力显微镜成像DNA结构
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Translocation and deletion breakpoints in cancer genomes are associated with potential non-B DNA-forming sequences.癌症基因组中的易位和缺失断点与潜在的非B型DNA形成序列相关。
Nucleic Acids Res. 2016 Jul 8;44(12):5673-88. doi: 10.1093/nar/gkw261. Epub 2016 Apr 15.
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Direct observation of DNA overwinding by reverse gyrase.通过反向回旋酶直接观察DNA过度缠绕
Proc Natl Acad Sci U S A. 2015 Jun 16;112(24):7495-500. doi: 10.1073/pnas.1422203112. Epub 2015 May 28.
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Disintegration of cruciform and G-quadruplex structures during the course of helicase-dependent amplification (HDA).在解旋酶依赖性扩增(HDA)过程中十字形结构和G-四链体结构的解聚
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Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation.人类基因组中潜在的非B型DNA区域与更高的核苷酸突变率和表达变异相关。
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Genome stability: recent insights in the topoisomerase reverse gyrase and thermophilic DNA alkyltransferase.基因组稳定性:拓扑异构酶反向回旋酶和嗜热DNA烷基转移酶的最新见解
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Positive supercoiling affiliated with nucleosome formation repairs non-B DNA structures.与核小体形成相关的正超螺旋修复非B型DNA结构。
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