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神经发育障碍中的反复性新生突变:特征及临床意义。

Recurrent de novo mutations in neurodevelopmental disorders: properties and clinical implications.

机构信息

Department of Genome Sciences, University of Washington School of Medicine, Seattle, WA, 98195, USA.

Howard Hughes Medical Institute, University of Washington, Seattle, WA, 98195, USA.

出版信息

Genome Med. 2017 Nov 27;9(1):101. doi: 10.1186/s13073-017-0498-x.

Abstract

Next-generation sequencing (NGS) is now more accessible to clinicians and researchers. As a result, our understanding of the genetics of neurodevelopmental disorders (NDDs) has rapidly advanced over the past few years. NGS has led to the discovery of new NDD genes with an excess of recurrent de novo mutations (DNMs) when compared to controls. Development of large-scale databases of normal and disease variation has given rise to metrics exploring the relative tolerance of individual genes to human mutation. Genetic etiology and diagnosis rates have improved, which have led to the discovery of new pathways and tissue types relevant to NDDs. In this review, we highlight several key findings based on the discovery of recurrent DNMs ranging from copy number variants to point mutations. We explore biases and patterns of DNM enrichment and the role of mosaicism and secondary mutations in variable expressivity. We discuss the benefit of whole-genome sequencing (WGS) over whole-exome sequencing (WES) to understand more complex, multifactorial cases of NDD and explain how this improved understanding aids diagnosis and management of these disorders. Comprehensive assessment of the DNM landscape across the genome using WGS and other technologies will lead to the development of novel functional and bioinformatics approaches to interpret DNMs and drive new insights into NDD biology.

摘要

下一代测序(NGS)现在对临床医生和研究人员来说更容易获得。因此,在过去的几年中,我们对神经发育障碍(NDD)遗传学的理解迅速提高。与对照相比,NGS 导致了新的 NDD 基因的发现,这些基因存在过多的反复性新生突变(DNMs)。大规模正常和疾病变异数据库的开发产生了探索个体基因对人类突变相对耐受性的指标。遗传病因学和诊断率得到了提高,这导致了与 NDD 相关的新途径和组织类型的发现。在这篇综述中,我们根据从拷贝数变异到点突变的反复性 DNMs 的发现,强调了几个关键发现。我们探讨了 DNM 富集的偏见和模式,以及镶嵌性和二次突变在可变表达中的作用。我们讨论了全基因组测序(WGS)相对于全外显子组测序(WES)的优势,以了解更复杂、多因素的 NDD 病例,并解释这种更好的理解如何有助于这些疾病的诊断和管理。使用 WGS 和其他技术对基因组中的 DNM 景观进行全面评估将导致开发新的功能和生物信息学方法来解释 DNMs,并推动对 NDD 生物学的新见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b865/5704398/5b77b0f5637c/13073_2017_498_Fig1_HTML.jpg

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