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我准备好使用 CRISPR 了吗?遗传筛选的用户指南。

Am I ready for CRISPR? A user's guide to genetic screens.

机构信息

Genetic Perturbation Platform, Broad Institute of MIT and Harvard, Cambridge, Massachusetts, 02142, USA.

出版信息

Nat Rev Genet. 2018 Feb;19(2):67-80. doi: 10.1038/nrg.2017.97. Epub 2017 Dec 4.

DOI:10.1038/nrg.2017.97
PMID:29199283
Abstract

Exciting new technologies are often self-limiting in their rollout, as access to state-of-the-art instrumentation or the need for years of hands-on experience, for better or worse, ensures slow adoption by the community. CRISPR technology, however, presents the opposite dilemma, where the simplicity of the system enabled the parallel development of many applications, improvements and derivatives, and new users are now presented with an almost paralyzing abundance of choices. This Review intends to guide users through the process of applying CRISPR technology to their biological problems of interest, especially in the context of discovering gene function at scale.

摘要

激动人心的新技术在推出时往往受到自身的限制,因为获得最先进的仪器或多年的实践经验,无论好坏,都确保了社区的缓慢采用。然而,CRISPR 技术带来了相反的困境,该系统的简单性使得许多应用、改进和衍生产品能够并行开发,现在新用户面临着几乎令人瘫痪的大量选择。本文旨在指导用户将 CRISPR 技术应用于他们感兴趣的生物学问题,特别是在大规模发现基因功能的背景下。

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Evaluation of RNAi and CRISPR technologies by large-scale gene expression profiling in the Connectivity Map.通过连通性图谱中的大规模基因表达谱评估RNA干扰和CRISPR技术。
PLoS Biol. 2017 Nov 30;15(11):e2003213. doi: 10.1371/journal.pbio.2003213. eCollection 2017 Nov.
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GUIDES: sgRNA design for loss-of-function screens.指南:用于功能缺失筛选的sgRNA设计
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Project DRIVE: A Compendium of Cancer Dependencies and Synthetic Lethal Relationships Uncovered by Large-Scale, Deep RNAi Screening.
一项全基因组CRISPR筛选揭示内体成熟蛋白WDR91是黑色素瘤中有效反义寡核苷酸(ASO)活性的促进因子。
Mol Ther Nucleic Acids. 2025 May 24;36(3):102577. doi: 10.1016/j.omtn.2025.102577. eCollection 2025 Sep 9.
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Screening for Host Proteins with Pro- and Antiviral Activity via High-Throughput CRISPR.通过高通量CRISPR筛选具有抗病毒和促病毒活性的宿主蛋白
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Engineering novel CRISPRi repressors for highly efficient mammalian gene regulation.工程化新型CRISPRi阻遏物用于高效的哺乳动物基因调控。
Genome Biol. 2025 Jun 12;26(1):164. doi: 10.1186/s13059-025-03640-4.
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A genome-wide in vivo CRISPR screen identifies neuroprotective strategies in the mouse and human retina.全基因组体内CRISPR筛选确定了小鼠和人类视网膜中的神经保护策略。
bioRxiv. 2025 Mar 24:2025.03.22.644712. doi: 10.1101/2025.03.22.644712.
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Cell Death Discov. 2025 May 17;11(1):239. doi: 10.1038/s41420-025-02526-5.
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Utilizing Stable Gene-Edited Knockout Pools for Genetic Screening and Engineering in Chinese Hamster Ovary Cells.利用稳定基因编辑敲除文库在中国仓鼠卵巢细胞中进行遗传筛选和工程改造
Biotechnol J. 2025 May;20(5):e70033. doi: 10.1002/biot.70033.
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Weaponizing CRISPR/Cas9 for selective elimination of cells with an aberrant genome.将CRISPR/Cas9技术用于选择性消除基因组异常的细胞。
DNA Repair (Amst). 2025 May;149:103840. doi: 10.1016/j.dnarep.2025.103840. Epub 2025 Apr 26.
10
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Mol Cell. 2025 May 1;85(9):1868-1886.e12. doi: 10.1016/j.molcel.2025.04.002. Epub 2025 Apr 23.
DRIVE 项目:通过大规模、深度 RNAi 筛选发现的癌症依赖性和合成致死关系概览。
Cell. 2017 Jul 27;170(3):577-592.e10. doi: 10.1016/j.cell.2017.07.005.
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Defining a Cancer Dependency Map.定义癌症依赖图谱。
Cell. 2017 Jul 27;170(3):564-576.e16. doi: 10.1016/j.cell.2017.06.010.
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In vivo CRISPR screening identifies Ptpn2 as a cancer immunotherapy target.体内CRISPR筛选确定Ptpn2为癌症免疫治疗靶点。
Nature. 2017 Jul 27;547(7664):413-418. doi: 10.1038/nature23270. Epub 2017 Jul 19.
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Evaluation and Design of Genome-Wide CRISPR/SpCas9 Knockout Screens.全基因组CRISPR/SpCas9基因敲除筛选的评估与设计
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