Leibniz-Institut für Molekulare Pharmakologie, Robert-Rössle-Strasse 10, 13125, Berlin, Germany.
Centre de RMN à Très Hauts Champs, Institute des Sciences Analytiques (CNRS, ENS Lyon, UCB Lyon 1), Université de Lyon, 69100, Villeurbanne, France.
Nat Commun. 2017 Dec 12;8(1):2073. doi: 10.1038/s41467-017-02228-2.
β-barrel proteins mediate nutrient uptake in bacteria and serve vital functions in cell signaling and adhesion. For the 14-strand outer membrane protein G of Escherichia coli, opening and closing is pH-dependent. Different roles of the extracellular loops in this process were proposed, and X-ray and solution NMR studies were divergent. Here, we report the structure of outer membrane protein G investigated in bilayers of E. coli lipid extracts by magic-angle-spinning NMR. In total, 1847 inter-residue H-H and C-C distance restraints, 256 torsion angles, but no hydrogen bond restraints are used to calculate the structure. The length of β-strands is found to vary beyond the membrane boundary, with strands 6-8 being the longest and the extracellular loops 3 and 4 well ordered. The site of barrel closure at strands 1 and 14 is more disordered than most remaining strands, with the flexibility decreasing toward loops 3 and 4. Loop 4 presents a well-defined helix.
β-桶蛋白介导细菌中的营养物质摄取,并在细胞信号转导和黏附中发挥重要功能。对于大肠杆菌的 14 股外膜蛋白 G,其开启和关闭是依赖于 pH 的。在这个过程中,不同的细胞外环具有不同的作用,而 X 射线和溶液 NMR 研究结果存在分歧。在此,我们通过魔角旋转 NMR 研究了在大肠杆菌脂质提取物双层中的外膜蛋白 G 的结构。总共使用了 1847 个残基间 H-H 和 C-C 距离约束、256 个扭转角,但没有氢键约束来计算结构。β-链的长度发现超出了膜边界,其中 6-8 股链最长,细胞外环 3 和 4 有序排列。桶关闭的位置在 1 股和 14 股链上比大多数剩余链更无序,其灵活性朝向 3 和 4 环降低。环 4 呈现出一个明确的螺旋。