Department of Pharmacological Sciences, Stony Brook University Medical School, Stony Brook, NY, 11794, USA.
QB3 Institute, University of California, Berkeley, CA, 94720, USA.
Nat Commun. 2017 Dec 18;8(1):2160. doi: 10.1038/s41467-017-02240-6.
The catalytic domain of protein tyrosine kinases can interconvert between active and inactive conformations in response to regulatory inputs. We recently demonstrated that Src kinase features an allosteric network that couples substrate-binding sites. However, the extent of conformational and dynamic changes that are propagated throughout the kinase domain remains poorly understood. Here, we monitor by NMR the effect of conformationally selective inhibitors on kinase backbone dynamics. We find that inhibitor binding and activation loop autophosphorylation induces dynamic changes across the entire kinase. We identify a highly conserved amino acid, Gly449, that is necessary for Src activation. Finally, we show for the first time how the SH3-SH2 domains perturb the dynamics of the kinase domain in the context of the full length protein. We provide experimental support for long-range communication in Src kinase that leads to the relative stabilization of active or inactive conformations and modulation of substrate affinity.
蛋白酪氨酸激酶的催化结构域可以根据调节输入在活性和非活性构象之间转换。我们最近证明,Src 激酶具有一个变构网络,将底物结合位点连接起来。然而,整个激酶域中传播的构象和动态变化的程度仍知之甚少。在这里,我们通过 NMR 监测构象选择性抑制剂对激酶骨架动力学的影响。我们发现抑制剂结合和激活环自磷酸化诱导整个激酶的动态变化。我们确定了一个高度保守的氨基酸 Gly449,它是 Src 激活所必需的。最后,我们首次展示了 SH3-SH2 结构域如何在全长蛋白的背景下干扰激酶结构域的动力学。我们为 Src 激酶中的远程通讯提供了实验支持,这导致了活性或非活性构象的相对稳定和底物亲和力的调节。