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Assessment of enzyme active site positioning and tests of catalytic mechanisms through X-ray-derived conformational ensembles.通过 X 射线衍生的构象集合评估酶活性位点定位和催化机制测试。
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NMR backbone assignment of a protein kinase catalytic domain by a combination of several approaches: application to the catalytic subunit of cAMP-dependent protein kinase.通过多种方法相结合对蛋白激酶催化结构域进行核磁共振主链归属:应用于环磷酸腺苷依赖性蛋白激酶的催化亚基
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Activation Loop Dynamics Are Coupled to Core Motions in Extracellular Signal-Regulated Kinase-2.激活环动力学与细胞外信号调节激酶-2 的核心运动相耦联。
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Ensemble-based modeling and rigidity decomposition of allosteric interaction networks and communication pathways in cyclin-dependent kinases: Differentiating kinase clients of the Hsp90-Cdc37 chaperone.基于集成的细胞周期蛋白依赖性激酶变构相互作用网络和通讯通路建模及刚性分解:区分Hsp90-Cdc37伴侣蛋白的激酶客户
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The structural basis of the multi-step allosteric activation of Aurora B kinase.Aurora B 激酶多步别构激活的结构基础。
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本文引用的文献

1
Kincore: a web resource for structural classification of protein kinases and their inhibitors.Kincore:一个用于蛋白质激酶及其抑制剂的结构分类的网络资源。
Nucleic Acids Res. 2022 Jan 7;50(D1):D654-D664. doi: 10.1093/nar/gkab920.
2
Defective internal allosteric network imparts dysfunctional ATP/substrate-binding cooperativity in oncogenic chimera of protein kinase A.癌基因蛋白激酶 A 嵌合体中缺陷的内部变构网络导致其 ATP/底物结合协同作用功能障碍。
Commun Biol. 2021 Mar 10;4(1):321. doi: 10.1038/s42003-021-01819-6.
3
Allostery governs Cdk2 activation and differential recognition of CDK inhibitors.变构调控 Cdk2 的激活和对 CDK 抑制剂的差异化识别。
Nat Chem Biol. 2021 Apr;17(4):456-464. doi: 10.1038/s41589-020-00725-y. Epub 2021 Feb 1.
4
Properties of FDA-approved small molecule protein kinase inhibitors: A 2021 update.FDA 批准的小分子蛋白激酶抑制剂的特性:2021 年更新。
Pharmacol Res. 2021 Mar;165:105463. doi: 10.1016/j.phrs.2021.105463. Epub 2021 Jan 26.
5
Differential impact of BTK active site inhibitors on the conformational state of full-length BTK.BTK 活性位点抑制剂对全长 BTK 构象状态的差异化影响。
Elife. 2020 Nov 23;9:e60470. doi: 10.7554/eLife.60470.
6
Conformational states dynamically populated by a kinase determine its function.构象状态由激酶动态填充,决定其功能。
Science. 2020 Oct 9;370(6513). doi: 10.1126/science.abc2754. Epub 2020 Oct 1.
7
Activation Loop Dynamics Are Coupled to Core Motions in Extracellular Signal-Regulated Kinase-2.激活环动力学与细胞外信号调节激酶-2 的核心运动相耦联。
Biochemistry. 2020 Jul 28;59(29):2698-2706. doi: 10.1021/acs.biochem.0c00485. Epub 2020 Jul 15.
8
Ancient origins of allosteric activation in a Ser-Thr kinase.别构激活在 Ser-Thr 激酶中的古老起源。
Science. 2020 Feb 21;367(6480):912-917. doi: 10.1126/science.aay9959.
9
Kinase Activation by Small Conformational Changes.激酶通过小的构象变化而被激活。
J Chem Inf Model. 2020 Feb 24;60(2):821-832. doi: 10.1021/acs.jcim.9b00782. Epub 2019 Nov 27.
10
Cushing's syndrome driver mutation disrupts protein kinase A allosteric network, altering both regulation and substrate specificity.库欣综合征驱动突变破坏蛋白激酶 A 的变构网络,改变其调节和底物特异性。
Sci Adv. 2019 Aug 28;5(8):eaaw9298. doi: 10.1126/sciadv.aaw9298. eCollection 2019 Aug.

蛋白质激酶的动态平衡。

Dynamic equilibria in protein kinases.

机构信息

Department of Biochemistry, The University of Colorado at Boulder, USA.

Department of Biochemistry, The University of Colorado at Boulder, USA.

出版信息

Curr Opin Struct Biol. 2021 Dec;71:215-222. doi: 10.1016/j.sbi.2021.07.006. Epub 2021 Aug 20.

DOI:10.1016/j.sbi.2021.07.006
PMID:34425481
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9718358/
Abstract

Structural changes involved in protein kinase activation and ligand binding have been determined from a wealth of X-ray crystallographic evidence. Recent solution studies using NMR, EPR, HX-MS, and fluorescence techniques have deepened this understanding by highlighting the underlying energetics and dynamics of multistate conformational ensembles. This new research is showing how activation mechanisms and ligand binding alter the internal motions of kinases and enable allosteric coupling between distal regulatory regions and the active site.

摘要

从大量的 X 射线晶体学证据中确定了蛋白激酶激活和配体结合涉及的结构变化。最近使用 NMR、EPR、HX-MS 和荧光技术的溶液研究通过突出多态构象集合的潜在能量和动力学,加深了对此的理解。这项新的研究表明激活机制和配体结合如何改变激酶的内部运动,并使远端调节区域和活性位点之间的变构偶联成为可能。