来自哈德逊河流域的一株产紫菌素菌株的基因组草图序列
Draft Genome Sequence of a Violacein-Producing sp. from the Hudson Valley Watershed.
作者信息
Doing Georgia, Perron Gabriel G, Jude Brooke A
机构信息
Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, New Hampshire, USA.
Reem-Kayden Center for Science and Computation, Program of Biology, Bard College, Annandale-on-Hudson, New York, USA.
出版信息
Genome Announc. 2018 Jan 4;6(1):e01428-17. doi: 10.1128/genomeA.01428-17.
Abstract
species are among a number of freshwater Gram-negative violacein-producing bacteria. and have had their whole genomes sequenced and annotated. This is the first report of a draft whole-genome sequence of a violacein-producing strain that was isolated from the Hudson Valley watershed.
摘要
该物种属于多种能产生紫色杆菌素的淡水革兰氏阴性菌。并且其全基因组已被测序和注释。这是关于从哈德逊河谷流域分离出的一株能产生紫色杆菌素菌株的全基因组序列草图的首次报道。
相似文献
1
Draft Genome Sequence of a Violacein-Producing sp. from the Hudson Valley Watershed.来自哈德逊河流域的一株产紫菌素菌株的基因组草图序列
Genome Announc. 2018 Jan 4;6(1):e01428-17. doi: 10.1128/genomeA.01428-17.
2
Draft Genome Sequence of a Red-Pigmented sp. Native to the Hudson Valley Watershed.哈德逊河流域原产的一种红色色素菌的基因组序列草图
Genome Announc. 2018 Jan 4;6(1):e01429-17. doi: 10.1128/genomeA.01429-17.
3
Draft Genome Sequences of Phenotypically Distinct sp. Isolates Cultured from the Hudson Valley Watershed.从哈德逊河流域分离培养出的表型不同的[具体物种名称]菌株的基因组序列草图
Genome Announc. 2018 Jan 18;6(3):e01426-17. doi: 10.1128/genomeA.01426-17.
4
Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives.新型产色堇细菌及其非产色堇亲缘关系密切菌株的基因组测序和多方面分类学分析。
Microb Genom. 2023 Apr;9(4). doi: 10.1099/mgen.0.000971.
5
Draft genome sequence of Janthinobacterium lividum strain MTR reveals its mechanism of capnophilic behavior.青紫杆菌菌株MTR的基因组序列草图揭示了其嗜二氧化碳行为机制。
Stand Genomic Sci. 2015 Nov 24;10:110. doi: 10.1186/s40793-015-0104-z. eCollection 2015.
6
Isolation and characterization of a novel violacein-like pigment producing psychrotrophic bacterial species Janthinobacterium svalbardensis sp. nov.新型冷生菌属产类紫菌素样色素的分离与鉴定
Antonie Van Leeuwenhoek. 2013 Apr;103(4):763-9. doi: 10.1007/s10482-012-9858-0. Epub 2012 Nov 29.
7
Microbial synthesis of violacein pigment and its potential applications.紫罗碱色素的微生物合成及其潜在应用。
Crit Rev Biotechnol. 2021 Sep;41(6):879-901. doi: 10.1080/07388551.2021.1892579. Epub 2021 Mar 17.
8
A Blue-Purple Pigment-Producing Bacterium Isolated from the Vezelka River in the City of Belgorod.从别尔哥罗德市韦泽尔卡河分离出的一种产蓝紫色色素的细菌。
Microorganisms. 2021 Jan 5;9(1):102. doi: 10.3390/microorganisms9010102.
9
Draft Genome Sequence of a Species from Hudson Valley Waterways That Expresses Violacein Pigment.来自哈德逊河谷水道的一种可产生紫菌素色素的物种的基因组序列草图
Microbiol Resour Announc. 2019 Aug 29;8(35):e00683-19. doi: 10.1128/MRA.00683-19.
10
Draft Genome Sequence of sp. Strain SLB01, Isolated from the Diseased Sponge .从患病海绵中分离出的[具体物种名称]菌株SLB01的基因组序列草图 。 （你原文中“sp.”处应有具体物种名称未给出）
Microbiol Resour Announc. 2019 Nov 7;8(45):e01108-19. doi: 10.1128/MRA.01108-19.
引用本文的文献
1
Genome sequencing and multifaceted taxonomic analysis of novel strains of violacein-producing bacteria and non-violacein-producing close relatives.新型产色堇细菌及其非产色堇亲缘关系密切菌株的基因组测序和多方面分类学分析。
Microb Genom. 2023 Apr;9(4). doi: 10.1099/mgen.0.000971.
2
Multi-target drug with potential applications: violacein in the spotlight.具有潜在应用价值的多靶点药物：聚酮类紫色杆菌素备受关注。
World J Microbiol Biotechnol. 2021 Aug 16;37(9):151. doi: 10.1007/s11274-021-03120-4.
3
Natural Pigments of Bacterial Origin and Their Possible Biomedical Applications.细菌源天然色素及其潜在的生物医学应用。
Microorganisms. 2021 Apr 1;9(4):739. doi: 10.3390/microorganisms9040739.
4
Biotechnological Activities and Applications of Bacterial Pigments Violacein and Prodigiosin.细菌色素紫菌素和灵菌红素的生物技术活性与应用
J Biol Eng. 2021 Mar 11;15(1):10. doi: 10.1186/s13036-021-00262-9.
5
Isolation and characterization of violacein from an Antarctic Iodobacter: a non-pathogenic psychrotolerant microorganism.从南极碘杆菌中分离和鉴定紫色杆菌素：一种非致病性耐寒微生物。
Extremophiles. 2020 Jan;24(1):43-52. doi: 10.1007/s00792-019-01111-w. Epub 2019 Jul 19.
6
Draft Genome Sequences of Violacein-Producing Duganella sp. Isolates from a Waterway in Eastern Pennsylvania.从宾夕法尼亚州东部一条水道分离出的产紫菌素杜氏菌属菌株的基因组草图序列
Microbiol Resour Announc. 2018 Sep 27;7(12). doi: 10.1128/MRA.01196-18. eCollection 2018 Sep.
本文引用的文献
1
Draft Genome Sequences of 10 Environmental Strains Isolated from Soils, Sediments, and Waters.从土壤、沉积物和水体中分离出的10株环境菌株的基因组序列草图
Genome Announc. 2017 Aug 24;5(34):e00804-17. doi: 10.1128/genomeA.00804-17.
2
Robust high-throughput prokaryote assembly and improvement pipeline for Illumina data.用于 Illumina 数据的稳健高通量原核生物组装和改进管道。
Microb Genom. 2016 Aug 25;2(8):e000083. doi: 10.1099/mgen.0.000083. eCollection 2016 Aug.
3
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center.全细菌生物信息学数据库与分析资源中心PATRIC的改进。
Nucleic Acids Res. 2017 Jan 4;45(D1):D535-D542. doi: 10.1093/nar/gkw1017. Epub 2016 Nov 29.
4
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
5
Violacein, an indole-derived purple-colored natural pigment produced by Janthinobacterium lividum, inhibits the growth of head and neck carcinoma cell lines both in vitro and in vivo.灵菌红素是由青枯雷尔氏菌产生的一种吲哚衍生的紫色天然色素，在体外和体内均能抑制头颈癌细胞系的生长。
Tumour Biol. 2016 Mar;37(3):3705-17. doi: 10.1007/s13277-015-4207-3. Epub 2015 Oct 13.
6
PATRIC, the bacterial bioinformatics database and analysis resource.PATRIC，细菌生物信息学数据库和分析资源。
Nucleic Acids Res. 2014 Jan;42(Database issue):D581-91. doi: 10.1093/nar/gkt1099. Epub 2013 Nov 12.
7
The cutaneous bacterium Janthinobacterium lividum inhibits the growth of Trichophyton rubrum in vitro.皮肤细菌青紫杆菌在体外可抑制红色毛癣菌的生长。
Int J Dermatol. 2015 Feb;54(2):156-9. doi: 10.1111/ijd.12217. Epub 2013 Aug 22.
8
GapFiller: a de novo assembly approach to fill the gap within paired reads.GapFiller：一种从头开始的组装方法，用于填补配对读取中的缺口。
BMC Bioinformatics. 2012;13 Suppl 14(Suppl 14):S8. doi: 10.1186/1471-2105-13-S14-S8. Epub 2012 Sep 7.
9
Synergistic inhibition of the lethal fungal pathogen Batrachochytrium dendrobatidis: the combined effect of symbiotic bacterial metabolites and antimicrobial peptides of the frog Rana muscosa.协同抑制致命真菌病原体蛙壶菌：共生细菌代谢物和青蛙 Rana muscosa 的抗菌肽的联合作用。
J Chem Ecol. 2012 Aug;38(8):958-65. doi: 10.1007/s10886-012-0170-2. Epub 2012 Aug 23.
10
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes：一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
Zotero 插件