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一种从头酶在大肠杆菌中催化维持生命的反应。

A de novo enzyme catalyzes a life-sustaining reaction in Escherichia coli.

机构信息

Department of Chemistry, Princeton University, Princeton, New Jersey, USA.

出版信息

Nat Chem Biol. 2018 Mar;14(3):253-255. doi: 10.1038/nchembio.2550. Epub 2018 Jan 15.

DOI:10.1038/nchembio.2550
PMID:29334382
Abstract

Producing novel enzymes that are catalytically active in vitro and biologically functional in vivo is a key goal of synthetic biology. Here we describe Syn-F4, the first de novo protein that meets both criteria. Purified Syn-F4 hydrolyzes the siderophore ferric enterobactin, and expression of Syn-F4 allows an inviable strain of Escherichia coli to grow in iron-limited medium. These findings demonstrate that entirely new sequences can provide life-sustaining enzymatic functions in living organisms.

摘要

在体外具有催化活性且在体内具有生物功能的新型酶是合成生物学的一个关键目标。在这里,我们描述了 Syn-F4,这是第一个满足这两个标准的从头设计的蛋白质。纯化的 Syn-F4 可水解铁载体肠杆菌素,并且 Syn-F4 的表达使一种在缺铁培养基中无法生存的大肠杆菌菌株能够生长。这些发现表明,全新的序列可以为生物体提供维持生命的酶功能。

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本文引用的文献

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A Non-natural Protein Rescues Cells Deleted for a Key Enzyme in Central Metabolism.一种非天然蛋白质拯救了因中央代谢关键酶缺失的细胞。
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2
A protein constructed de novo enables cell growth by altering gene regulation.一种从头构建的蛋白质通过改变基因调控来促进细胞生长。
Proc Natl Acad Sci U S A. 2016 Mar 1;113(9):2400-5. doi: 10.1073/pnas.1600566113. Epub 2016 Feb 16.
3
A de novo protein confers copper resistance in Escherichia coli.一种全新的蛋白质赋予大肠杆菌铜抗性。
bioRxiv. 2025 Mar 19:2025.01.30.635804. doi: 10.1101/2025.01.30.635804.
4
Spiers Memorial Lecture: Engineering biocatalysts.斯皮尔斯纪念演讲:工程生物催化剂。
Faraday Discuss. 2024 Sep 11;252(0):9-28. doi: 10.1039/d4fd00139g.
5
Selection of a promiscuous minimalist cAMP phosphodiesterase from a library of de novo designed proteins.从从头设计的蛋白质文库中选择一种杂乱无章的最小 cAMP 磷酸二酯酶。
Nat Chem. 2024 Jul;16(7):1200-1208. doi: 10.1038/s41557-024-01490-4. Epub 2024 May 3.
6
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Chem Sci. 2023 Sep 13;14(40):10997-11011. doi: 10.1039/d3sc02982d. eCollection 2023 Oct 18.
7
Evolution and synthetic biology.进化与合成生物学。
Curr Opin Microbiol. 2023 Dec;76:102394. doi: 10.1016/j.mib.2023.102394. Epub 2023 Oct 4.
8
Crystal structure and activity of a de novo enzyme, ferric enterobactin esterase Syn-F4.新型酶铁源肠菌素酯酶 Syn-F4 的晶体结构与活性
Proc Natl Acad Sci U S A. 2023 Sep 19;120(38):e2218281120. doi: 10.1073/pnas.2218281120. Epub 2023 Sep 11.
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Protein Sci. 2016 Jul;25(7):1249-59. doi: 10.1002/pro.2871. Epub 2016 Jan 25.
4
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5
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6
A designed supramolecular protein assembly with in vivo enzymatic activity.具有体内酶活性的设计超分子蛋白质组装体。
Science. 2014 Dec 19;346(6216):1525-8. doi: 10.1126/science.1259680.
7
Divergent evolution of a bifunctional de novo protein.一种双功能从头合成蛋白质的趋异进化。
Protein Sci. 2015 Feb;24(2):246-52. doi: 10.1002/pro.2611. Epub 2014 Dec 26.
8
Computational design of catalytic dyads and oxyanion holes for ester hydrolysis.催化偶联物和酯水解的阴离子空穴的计算设计。
J Am Chem Soc. 2012 Oct 3;134(39):16197-206. doi: 10.1021/ja3037367. Epub 2012 Sep 21.
9
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Proc Natl Acad Sci U S A. 2011 May 10;108(19):7896-901. doi: 10.1073/pnas.1016024108. Epub 2011 Apr 4.
10
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PLoS One. 2011 Jan 4;6(1):e15364. doi: 10.1371/journal.pone.0015364.