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利用重新利用的3D打印机和重组酶聚合酶扩增技术迈向快速且低成本的即时分子诊断。

Moving toward rapid and low-cost point-of-care molecular diagnostics with a repurposed 3D printer and RPA.

作者信息

Chan Kamfai, Wong Pui-Yan, Parikh Chaitanya, Wong Season

机构信息

AI Biosciences, Inc., College Station, TX 77845, USA.

AI Biosciences, Inc., College Station, TX 77845, USA.

出版信息

Anal Biochem. 2018 Mar 15;545:4-12. doi: 10.1016/j.ab.2018.01.008. Epub 2018 Jan 12.

DOI:10.1016/j.ab.2018.01.008
PMID:29339059
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5849525/
Abstract

Traditionally, the majority of nucleic acid amplification-based molecular diagnostic tests are done in centralized settings. In recent years, point-of-care tests have been developed for use in low-resource settings away from central laboratories. While most experts agree that point-of-care molecular tests are greatly needed, their availability as cost-effective and easy-to-operate tests remains an unmet goal. In this article, we discuss our efforts to develop a recombinase polymerase amplification reaction-based test that will meet these criteria. First, we describe our efforts in repurposing a low-cost 3D printer as a platform that can carry out medium-throughput, rapid, and high-performing nucleic acid extraction. Next, we address how these purified templates can be rapidly amplified and analyzed using the 3D printer's heated bed or the deconstructed, low-cost thermal cycler we have developed. In both approaches, real-time isothermal amplification and detection of template DNA or RNA can be accomplished using a low-cost portable detector or smartphone camera. Last, we demonstrate the capability of our technologies using foodborne pathogens and the Zika virus. Our low-cost approach does not employ complicated and high-cost components, making it suitable for resource-limited settings. When integrated and commercialized, it will offer simple sample-to-answer molecular diagnostics.

摘要

传统上,大多数基于核酸扩增的分子诊断测试是在集中式环境中进行的。近年来,即时检测已被开发出来,用于远离中心实验室的资源匮乏地区。虽然大多数专家都认为即时分子检测非常必要,但作为经济高效且易于操作的检测手段,其可用性仍是一个未实现的目标。在本文中,我们讨论了开发一种基于重组酶聚合酶扩增反应的检测方法的努力,该方法将满足这些标准。首先,我们描述了将低成本3D打印机重新用作一个可进行中等通量、快速且高性能核酸提取的平台的努力。接下来,我们阐述如何使用3D打印机的加热床或我们开发的解构低成本热循环仪对这些纯化的模板进行快速扩增和分析。在这两种方法中,可使用低成本便携式检测仪或智能手机摄像头实现模板DNA或RNA的实时等温扩增和检测。最后,我们使用食源性病原体和寨卡病毒展示了我们技术的能力。我们的低成本方法不使用复杂且昂贵的组件,使其适用于资源有限的环境。当整合并商业化时,它将提供从样本到答案的简单分子诊断。

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本文引用的文献

1
Rapid, Affordable and Portable Medium-Throughput Molecular Device for Zika Virus.用于寨卡病毒的快速、经济、便携的中通量分子检测设备。
Sci Rep. 2016 Dec 9;6:38223. doi: 10.1038/srep38223.
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PLoS One. 2016 Jun 30;11(6):e0158502. doi: 10.1371/journal.pone.0158502. eCollection 2016.
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A Rapid and Low-Cost PCR Thermal Cycler for Infectious Disease Diagnostics.一种用于传染病诊断的快速低成本聚合酶链式反应热循环仪。
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Factors influencing Recombinase polymerase amplification (RPA) assay outcomes at point of care.影响即时检测中重组酶聚合酶扩增(RPA)检测结果的因素。
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