Liu Ya-Jun, Liu Shiyue, Dong Sheng, Li Renmin, Feng Yingang, Cui Qiu
1Shandong Provincial Key Laboratory of Energy Genetics, CAS Key Laboratory of Biofuels, Qingdao Engineering Laboratory of Single Cell Oil, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, 266101 People's Republic of China.
2University of Chinese Academy of Sciences, Chinese Academy of Sciences, Beijing, 100049 People's Republic of China.
Biotechnol Biofuels. 2018 Jan 13;11:6. doi: 10.1186/s13068-017-1009-4. eCollection 2018.
is considered one of the most efficient natural cellulose degraders because of its cellulosomal system. As the major exoglucanase of cellulosome in , Cel48S plays key roles and influences the activity and features of cellulosome to a great extent. Thus, it is of great importance to reveal the enzymatic features of Cel48S. However, Cel48S has not been well performed due to difficulties in purifying either recombinant or native Cel48S proteins.
We observed that the soluble fraction of the catalytic domain of Cel48S (Cel48S_CD) obtained by heterologous expression in and denaturation-refolding treatment contained a large portion of incorrectly folded proteins with low activity. Using a previously developed seamless genome-editing system for , we achieved direct purification of Cel48S_CD from the culture supernatant of DSM1313 by inserting a sequence encoding 12 successive histidine residues and a TAA stop codon immediately behind the GH domain of Cel48S. Based on the fully active protein, biochemical and structural analyses were performed to reveal its innate characteristics. The native Cel48S_CD showed high activity of 117.61 ± 2.98 U/mg and apparent substrate preference for crystalline cellulose under the assay conditions. The crystal structure of the native GH48 protein revealed substrate-coupled changes in the residue conformation, indicating induced-fit effects between Cel48S_CD and substrates. Mass spectrum and crystal structural analyses suggested no significant posttranslational modification in the native Cel48S_CD protein.
Our results confirmed that the high activity and substrate specificity of Cel48S_CD from were consistent with its importance in the cellulosome. The structure of the native Cel48S_CD protein revealed evidence of conformational changes during substrate binding. In addition, our study provided a reliable method for in situ purification of cellulosomal and other secretive proteins from .
由于其纤维小体系统,被认为是最有效的天然纤维素降解菌之一。作为中纤维小体的主要外切葡聚糖酶,Cel48S发挥着关键作用,并在很大程度上影响纤维小体的活性和特性。因此,揭示Cel48S的酶学特性具有重要意义。然而,由于纯化重组或天然Cel48S蛋白存在困难,Cel48S尚未得到很好的研究。
我们观察到,通过在中异源表达和变性复性处理获得的Cel48S催化结构域(Cel48S_CD)的可溶部分包含大部分折叠错误且活性低的蛋白质。使用先前开发的用于的无缝基因组编辑系统,我们通过在Cel48S的GH结构域后面立即插入编码12个连续组氨酸残基的序列和一个TAA终止密码子,从DSM1313的培养上清液中直接纯化了Cel48S_CD。基于完全活性的蛋白质,进行了生化和结构分析以揭示其固有特性。天然Cel48S_CD在测定条件下显示出117.61±2.98 U/mg的高活性以及对结晶纤维素明显的底物偏好。天然GH48蛋白的晶体结构揭示了底物结合时残基构象的耦合变化,表明Cel48S_CD与底物之间存在诱导契合效应。质谱和晶体结构分析表明天然Cel48S_CD蛋白中没有明显的翻译后修饰。
我们的结果证实,来自的Cel48S_CD的高活性和底物特异性与其在纤维小体中的重要性一致。天然Cel48S_CD蛋白的结构揭示了底物结合过程中构象变化的证据。此外,我们的研究提供了一种从原位纯化纤维小体蛋白和其他分泌蛋白的可靠方法。