从大韩民国东海海洋沉积物中分离出的DOK2-8的全基因组序列
Complete Genome Sequence of DOK2-8 Isolated from Marine Sediment from the East Sea, Republic of Korea.
作者信息
Lim Se Ra, Jeong Dae Gwin, Chi Won-Jae, Kim Ji Hyung
机构信息
Infectious Disease Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, Republic of Korea.
Biological and Genetic Resources Assessment Division, National Institute of Biological Resources, Incheon, Republic of Korea
出版信息
Genome Announc. 2018 Jan 18;6(3):e01485-17. doi: 10.1128/genomeA.01485-17.
Abstract
has recently been considered a potential fish pathogen. Here, we report the complete genome sequence of DOK2-8, which possesses several virulence-related genes. This strain may be potentially virulent to other marine organisms, and its genomic information will provide important insights into the biodiversity of the genus .
摘要
最近被认为是一种潜在的鱼类病原体。在此，我们报告了DOK2-8的全基因组序列，该菌株拥有多个与毒力相关的基因。该菌株可能对其他海洋生物具有潜在毒性，其基因组信息将为该属的生物多样性提供重要见解。
相似文献
1
Complete Genome Sequence of DOK2-8 Isolated from Marine Sediment from the East Sea, Republic of Korea.从大韩民国东海海洋沉积物中分离出的DOK2-8的全基因组序列
Genome Announc. 2018 Jan 18;6(3):e01485-17. doi: 10.1128/genomeA.01485-17.
2
Description of Lacinutrix venerupis sp. nov.: a novel bacterium associated with reared clams.新种文蛤拉克氏菌的描述：一种与养殖蛤相关的新型细菌。
Syst Appl Microbiol. 2015 Mar;38(2):115-9. doi: 10.1016/j.syapm.2014.10.012. Epub 2014 Nov 13.
3
Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix.新种南极嗜冷拉克氏菌，从南极海洋沉积物中分离得到及拉克氏菌属的修订描述
Antonie Van Leeuwenhoek. 2014 Sep;106(3):527-33. doi: 10.1007/s10482-014-0221-5. Epub 2014 Jul 20.
4
Isolation of Lacinutrix venerupis strains associated with disease outbreaks in sea bream Sparus aurata and European sea bass Dicentrarchus labrax.与金头鲷和欧洲鲈鱼疾病暴发相关的乳杆菌属菌株的分离。
Dis Aquat Organ. 2017 Mar 30;124(1):85-90. doi: 10.3354/dao03103.
5
Draft genome sequence of the psychrophilic bacterium Lacinutrix jangbogonensis PAMC 27137(T).嗜冷菌长波湖拉克氏菌PAMC 27137(T)的基因组序列草图
Mar Genomics. 2015 Oct;23:31-2. doi: 10.1016/j.margen.2015.04.002. Epub 2015 Apr 17.
6
Lacinutrix himadriensis sp. nov., a psychrophilic bacterium isolated from a marine sediment, and emended description of the genus Lacinutrix.希马德里拉氏菌属，一种从海洋沉积物中分离出来的嗜冷细菌，并对该属的描述进行了修正。
Int J Syst Evol Microbiol. 2013 Feb;63(Pt 2):729-734. doi: 10.1099/ijs.0.040907-0. Epub 2012 May 4.
7
Lacinutrix chionocetis sp. nov., isolated from gut of a red snow crab.新种雪蟹拉克氏菌，从红雪蟹肠道中分离得到。
Arch Microbiol. 2017 May;199(4):597-603. doi: 10.1007/s00203-016-1330-5. Epub 2016 Dec 27.
8
sp. nov., isolated from the surface of a marine red alga sp.新种，从一种海洋红藻的表面分离得到。
Int J Syst Evol Microbiol. 2016 Feb;66(2):587-591. doi: 10.1099/ijsem.0.000755. Epub 2015 Nov 9.
9
Lacinutrix algicola sp. nov. and Lacinutrix mariniflava sp. nov., two novel marine alga-associated bacteria and emended description of the genus Lacinutrix.新种嗜藻拉西氏菌和新种海生拉西氏菌，两种新型海洋藻类相关细菌及拉西氏菌属的修订描述
Int J Syst Evol Microbiol. 2008 Dec;58(Pt 12):2694-8. doi: 10.1099/ijs.0.65799-0.
10
Description of Lacinutrix salivirga sp. nov., a marine member of the family Flavobacteriaceae isolated from seawater.盐生黄杆菌新种（Lacinutrix salivirga sp. nov.）的描述，一种从海水中分离出的黄杆菌科海洋成员。
Arch Microbiol. 2018 Oct;200(8):1159-1165. doi: 10.1007/s00203-018-1533-z. Epub 2018 Jun 5.
本文引用的文献
1
Isolation of Lacinutrix venerupis strains associated with disease outbreaks in sea bream Sparus aurata and European sea bass Dicentrarchus labrax.与金头鲷和欧洲鲈鱼疾病暴发相关的乳杆菌属菌株的分离。
Dis Aquat Organ. 2017 Mar 30;124(1):85-90. doi: 10.3354/dao03103.
2
OrthoANI: An improved algorithm and software for calculating average nucleotide identity.OrthoANI：一种用于计算平均核苷酸一致性的改进算法及软件。
Int J Syst Evol Microbiol. 2016 Feb;66(2):1100-1103. doi: 10.1099/ijsem.0.000760. Epub 2015 Nov 9.
3
VFDB 2016: hierarchical and refined dataset for big data analysis--10 years on.VFDB 2016：用于大数据分析的分层细化数据集——十年回顾
Nucleic Acids Res. 2016 Jan 4;44(D1):D694-7. doi: 10.1093/nar/gkv1239. Epub 2015 Nov 17.
4
Description of Lacinutrix venerupis sp. nov.: a novel bacterium associated with reared clams.新种文蛤拉克氏菌的描述：一种与养殖蛤相关的新型细菌。
Syst Appl Microbiol. 2015 Mar;38(2):115-9. doi: 10.1016/j.syapm.2014.10.012. Epub 2014 Nov 13.
5
Salinivibrio proteolyticus sp. nov., a moderately halophilic and proteolytic species from a hypersaline lake in Iran.蛋白水解盐弧菌新种，一种来自伊朗高盐湖的中度嗜盐且能蛋白水解的细菌。
Int J Syst Evol Microbiol. 2008 May;58(Pt 5):1159-63. doi: 10.1099/ijs.0.65423-0.
6
Novel members of the family Flavobacteriaceae from Antarctic maritime habitats including Subsaximicrobium wynnwilliamsii gen. nov., sp. nov., Subsaximicrobium saxinquilinus sp. nov., Subsaxibacter broadyi gen. nov., sp. nov., Lacinutrix copepodicola gen. nov., sp. nov., and novel species of the genera Bizionia, Gelidibacter and Gillisia.来自南极海洋栖息地的黄杆菌科新成员，包括温氏亚萨克微生物新属、新种，亚萨克嗜岸微生物新种，布氏亚萨克杆菌新属、新种，桡足类湖栖菌新属、新种，以及比齐奥尼亚属、嗜冷杆菌属和吉利斯菌属的新物种。
Int J Syst Evol Microbiol. 2005 Jul;55(Pt 4):1471-1486. doi: 10.1099/ijs.0.63527-0.
7
VFDB: a reference database for bacterial virulence factors.VFDB：细菌毒力因子参考数据库。
Nucleic Acids Res. 2005 Jan 1;33(Database issue):D325-8. doi: 10.1093/nar/gki008.
Zotero 插件