Nóbrega Maria S, Silva Bruno S, Leomil Luciana, Tschoeke Diogo Antonio, Campeão Mariana E, Garcia Gizele D, Dias Graciela A, Vieira Verônica V, Thompson Cristiane C, Thompson Fabiano L
Instituto de Biologia, Universidade Federal do Rio de Janeiro, Rio De Janeiro, RJ, Brazil.
Núcleo em Ecologia e Desenvolvimento Sócio-Ambiental de Macaé (NUPEM), Universidade Federal do Rio de Janeiro, Macaé, RJ, Brazil.
Antonie Van Leeuwenhoek. 2018 Jul;111(7):1131-1138. doi: 10.1007/s10482-018-1016-x. Epub 2018 Jan 18.
Two Gram-negative, motile, aerobic bacteria isolated from waters of the Abrolhos Bank were classified through a whole genome-based taxonomy. Strains PEL67E and PEL68C shared 99% 16S rRNA and dnaK sequence identity with Alteromonas marina SW-47 and Alteromonas macleodii ATCC 27126. In silico DNA-DNA Hybridization, i.e. genome-to-genome distance (GGD), average amino acid identity (AAI) and average nucleotide identity (ANI) showed that PEL67E and PEL68C had identity values between 33-36, 86-88 and 83-84%, and 85-86 and 83%, respectively, towards their close neighbors A. macleodii ATCC 27126 and A. marina SW-47. The DNA G + C contents of PEL67E and PEL68C were 44.5%. The phenotypic features that differentiate PEL67E and PEL68C strains from their close neighbors were assimilation of galactose and activity of phosphatase, and lack of mannitol, maltose, acetate, xylose and glycerol assimilation and lack of lipase, α and β-glucosidase activity. The new species Alteromonas abrolhosensis is proposed. The type strain is PEL67E (= CBAS 610 = CAIM 1925).
从阿布洛霍斯浅滩水域分离出的两株革兰氏阴性、具运动性、需氧细菌通过基于全基因组的分类法进行了分类。菌株PEL67E和PEL68C与海交替单胞菌SW-47和麦克劳德交替单胞菌ATCC 27126的16S rRNA和dnaK序列同一性为99%。电子DNA-DNA杂交,即基因组到基因组距离(GGD)、平均氨基酸同一性(AAI)和平均核苷酸同一性(ANI)表明,PEL67E和PEL68C与其近邻麦克劳德交替单胞菌ATCC 27126和海交替单胞菌SW-47的同一性值分别为33 - 36%、86 - 88%和83 - 84%,以及85 - 86%和83%。PEL67E和PEL68C的DNA G + C含量为44.5%。使PEL67E和PEL68C菌株与其近邻区分开来的表型特征为半乳糖同化作用和磷酸酶活性,以及缺乏甘露醇、麦芽糖、乙酸盐、木糖和甘油同化作用以及缺乏脂肪酶、α和β - 葡萄糖苷酶活性。提出了新物种阿布洛霍斯交替单胞菌。模式菌株为PEL67E(= CBAS 610 = CAIM 1925)。