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揭示生物膜形成强弱形成者的定量蛋白质组学揭示了生物膜形成的新调控因子。

Quantitative Proteomics of Strong and Weak Biofilm Formers of Reveals Novel Regulators of Biofilm Formation.

机构信息

From the Oral Sciences, Faculty of Dentistry, National University of Singapore.

Department of Biological Sciences, Faculty of Science, National University of Singapore.

出版信息

Mol Cell Proteomics. 2018 Apr;17(4):643-654. doi: 10.1074/mcp.RA117.000461. Epub 2018 Jan 22.

DOI:10.1074/mcp.RA117.000461
PMID:29358339
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5880108/
Abstract

is a bacterial pathogen associated with both endodontic and systemic infections. The biofilm formation ability of plays a key role in its virulence and drug resistance attributes. The formation of biofilms on implanted medical devices often results in treatment failure. In the present study, we report protein markers associated with the biofilm formation ability of using iTRAQ-based quantitative proteomics approach. In order to elucidate the biofilm-associated protein markers, we investigated the proteome of strong and weak biofilm-forming clinical isolates in comparison with standard American Type Culture Collection (ATCC) control strains. Comparison of strong and weak biofilm-forming clinical isolates with ATCC control strains showed that proteins associated with shikimate kinase pathway and sulfate transport were up-regulated in the strong biofilm former, while proteins associated with secondary metabolites, cofactor biosynthesis, and tetrahydrofolate biosynthesis were down-regulated. In the weak biofilm former, proteins associated with nucleoside and nucleotide biosynthesis were up-regulated, whereas proteins associated with sulfate and sugar transport were down-regulated. Further pathway and gene ontology analyses revealed that the major differences in biofilm formation arise from differences in metabolic activity levels of the strong and weak biofilm formers, with higher levels of metabolic activity observed in the weak biofilm former. The differences in metabolic activity could therefore be a major determinant of the biofilm ability of The new markers identified from this study can be further characterized in order to understand their exact role in biofilm formation ability. This, in turn, can lead to numerous therapeutic benefits in the treatment of this oral and systemic pathogen. The data has been deposited to the ProteomeXchange with identifier PXD006542.

摘要

是一种与牙髓和全身感染有关的细菌病原体。 在其毒力和耐药特性中,生物膜形成能力起着关键作用。 植入式医疗器械上 的生物膜形成常导致治疗失败。 在本研究中,我们使用 iTRAQ 定量蛋白质组学方法报告与 的生物膜形成能力相关的蛋白质标志物。 为了阐明与生物膜相关的蛋白质标志物,我们比较了强和弱生物膜形成的 临床分离株与标准美国典型培养物保藏中心(ATCC)对照菌株的蛋白质组。 比较强和弱生物膜形成的临床分离株与 ATCC 对照菌株显示,与莽草酸激酶途径和硫酸盐转运相关的蛋白质在强生物膜形成者中上调,而与次生代谢物、辅酶生物合成和四氢叶酸生物合成相关的蛋白质下调。 在弱生物膜形成者中,与核苷和核苷酸生物合成相关的蛋白质上调,而与硫酸盐和糖转运相关的蛋白质下调。 进一步的途径和基因本体分析表明,生物膜形成的主要差异源于强和弱生物膜形成者代谢活性水平的差异,弱生物膜形成者的代谢活性水平更高。 因此,代谢活性的差异可能是 生物膜能力的主要决定因素。 从这项研究中鉴定的新标记物可以进一步表征,以了解它们在 生物膜形成能力中的确切作用。 这反过来又可以在治疗这种口腔和全身病原体方面带来许多治疗益处。 该数据已被存入 ProteomeXchange,标识符为 PXD006542。