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创伤性脑损伤后小鼠脑细胞外空间外泌体中环状 RNA 的表达变化。

Circular Ribonucleic Acid Expression Alteration in Exosomes from the Brain Extracellular Space after Traumatic Brain Injury in Mice.

机构信息

1 Department of Pharmacy, General Hospital, Tianjin Medical University , Tianjin, China .

2 Department of Neurosurgery, General Hospital, Tianjin Neurological Institute, Tianjin Medical University , Tianjin, China .

出版信息

J Neurotrauma. 2018 Sep 1;35(17):2056-2066. doi: 10.1089/neu.2017.5502. Epub 2018 May 31.

Abstract

Traumatic brain injury (TBI) has high morbidity and mortality rates. The mechanisms underlying TBI are unclear and may include the change in biological material in exosomes. Circular ribonucleic acids (circRNAs) are enriched and stable in exosomes, which can function as microRNA (miRNA) sponges to regulate gene expression levels. Therefore, we speculated that circRNAs in exosomes might play an important role in regulating gene expression after TBI and then regulate specific signaling pathways, which may protect the brain. We first isolated exosomes from the brain extracellular space in mice with TBI by digestion. We then investigated the alterations in circRNA expression in exosomes by high-throughput whole transcriptome sequencing, analyzed the data by gene ontology (GO) and pathway analysis, and constructed the circRNA-miRNA network. In this study, we identified 231 significantly and differentially expressed circRNAs, including 155 that were upregulated and 76 that were downregulated. GO analysis showed that these differentially expressed circRNAs might be related to the growth and repair of neurons, the development of the nervous system, and the transmission of nerve signals. The most highly correlated pathways that we identified were involved primarily with glutamatergic synapse and the cyclic guanosine monophosphate-protein kinase G signaling pathway. The circRNA-miRNA network predicted the potential roles of these differentially expressed circRNAs and the interaction of circRNAs with miRNAs. Our study broadens the horizon of research on gene regulation in exosomes from the brain extracellular space after TBI and provides novel targets for further research on both the molecular mechanisms of TBI and the potential intervention therapy targets.

摘要

创伤性脑损伤 (TBI) 的发病率和死亡率都很高。TBI 的发病机制尚不清楚,可能包括外泌体中生物物质的变化。环状核糖核酸 (circRNA) 在 外泌体中丰富且稳定,可以作为 microRNA (miRNA) 海绵来调节基因表达水平。因此,我们推测外泌体中的 circRNA 可能在 TBI 后调节基因表达中发挥重要作用,进而调节特定的信号通路,从而保护大脑。我们首先通过消化从 TBI 小鼠的脑细胞外空间中分离出外泌体。然后,我们通过高通量全转录组测序研究外泌体中 circRNA 表达的变化,通过基因本体 (GO) 和通路分析对数据进行分析,并构建 circRNA-miRNA 网络。在这项研究中,我们鉴定了 231 个显著差异表达的 circRNA,包括 155 个上调和 76 个下调。GO 分析表明,这些差异表达的 circRNA 可能与神经元的生长和修复、神经系统的发育以及神经信号的传递有关。我们鉴定的相关性最高的途径主要与谷氨酰胺能突触和环鸟苷酸蛋白激酶 G 信号通路有关。circRNA-miRNA 网络预测了这些差异表达的 circRNA 的潜在作用以及 circRNA 与 miRNA 的相互作用。我们的研究拓宽了 TBI 后脑细胞外空间中外泌体中基因调控研究的视野,并为进一步研究 TBI 的分子机制和潜在的干预治疗靶点提供了新的目标。

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