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环状RNA在人类创伤性脑损伤中的表达特征

Expression characteristics of circular RNA in human traumatic brain injury.

作者信息

Li Zhenxing, Lin Yixing, Mao Lei, Zhang Li

机构信息

Department of Neurosurgery, Jinling Hospital, School of Medicine, Nanjing University, Nanjing, Jiangsu, China.

出版信息

Front Neurol. 2023 Jan 11;13:1086553. doi: 10.3389/fneur.2022.1086553. eCollection 2022.

Abstract

Traumatic brain injury (TBI) causes high rates of worldwide mortality and morbidity due to the complex secondary injury cascade. Recently, circular ribonucleic acids (circRNAs) have attracted significant attention in a variety of diseases. However, their expression characteristics in human TBI are still unclear. In this study, we examined brain injury tissues from six severe TBI patients in Jinling Hospital. The TBI tissues and adjacent brain contusion tissues were used to analyze differential expression signatures of circRNAs through full-length transcriptome sequencing, Gene Ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and ceRNA network construction. Our results found that there were 126 differently expressed circRNAs in TBI. Among them, 64 circRNAs were up-regulated and 62 circRNAs were down-regulated. Moreover, GO and KEGG analyses revealed that the aberrantly expressed circRNAs participated in many pathophysiological processes of TBI, especially regarding microglial cell activation, protein transport, protein processing and inflammation. Furthermore, the ceRNA (circRNA-miRNA-mRNA) network predicted that there existed strong relationship among circRNA, miRNA and mRNA. Taken together, our results indicated for the first time that the expression profiles of circRNAs were different after human TBI. In addition, we found the signaling pathways that were related to circRNAs and predicted a ceRNA network, which provided new insight of circRNAs in human TBI.

摘要

由于复杂的继发性损伤级联反应,创伤性脑损伤(TBI)在全球范围内导致了高死亡率和高发病率。最近,环状核糖核酸(circRNAs)在多种疾病中引起了广泛关注。然而,它们在人类TBI中的表达特征仍不清楚。在本研究中,我们检测了金陵医院6例重度TBI患者的脑损伤组织。利用TBI组织和相邻的脑挫伤组织,通过全长转录组测序、基因本体论(GO)分析、京都基因与基因组百科全书(KEGG)通路分析和ceRNA网络构建,分析circRNAs的差异表达特征。我们的结果发现,TBI中有126个差异表达的circRNAs。其中,64个circRNAs上调,62个circRNAs下调。此外,GO和KEGG分析表明,异常表达的circRNAs参与了TBI的许多病理生理过程,特别是小胶质细胞激活、蛋白质转运、蛋白质加工和炎症。此外,ceRNA(circRNA-miRNA-mRNA)网络预测circRNA、miRNA和mRNA之间存在密切关系。综上所述,我们的结果首次表明,人类TBI后脑组织中circRNAs的表达谱发生了变化。此外,我们发现了与circRNAs相关的信号通路,并预测了一个ceRNA网络,这为circRNAs在人类TBI中的作用提供了新的见解。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e732/9874311/61f72958e906/fneur-13-1086553-g0001.jpg

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