Ohta Tazro, Kawashima Takeshi, Shinozaki Natsuko O, Dobashi Akito, Hiraoka Satoshi, Hoshino Tatsuhiko, Kanno Keiichi, Kataoka Takafumi, Kawashima Shuichi, Matsui Motomu, Nemoto Wataru, Nishijima Suguru, Suganuma Natsuki, Suzuki Haruo, Taguchi Y-H, Takenaka Yoichi, Tanigawa Yosuke, Tsuneyoshi Momoka, Yoshitake Kazutoshi, Sato Yukuto, Yamashita Riu, Arakawa Kazuharu, Iwasaki Wataru
Database Center for Life Science (DBCLS), Joint Support-Center for Data Science Research, Research Organization of Information and Systems (ROIS), Mishima, Shizuoka, 411-8540, Japan.
National Institute of Genetics, Mishima, Shizuoka, 411-8540, Japan.
J Plant Res. 2018 Jul;131(4):709-717. doi: 10.1007/s10265-018-1017-x. Epub 2018 Feb 19.
Recent studies have shown that environmental DNA is found almost everywhere. Flower petal surfaces are an attractive tissue to use for investigation of the dispersal of environmental DNA in nature as they are isolated from the external environment until the bud opens and only then can the petal surface accumulate environmental DNA. Here, we performed a crowdsourced experiment, the "Ohanami Project", to obtain environmental DNA samples from petal surfaces of Cerasus × yedoensis 'Somei-yoshino' across the Japanese archipelago during spring 2015. C. × yedoensis is the most popular garden cherry species in Japan and clones of this cultivar bloom simultaneously every spring. Data collection spanned almost every prefecture and totaled 577 DNA samples from 149 collaborators. Preliminary amplicon-sequencing analysis showed the rapid attachment of environmental DNA onto the petal surfaces. Notably, we found DNA of other common plant species in samples obtained from a wide distribution; this DNA likely originated from the pollen of the Japanese cedar. Our analysis supports our belief that petal surfaces after blossoming are a promising target to reveal the dynamics of environmental DNA in nature. The success of our experiment also shows that crowdsourced environmental DNA analyses have considerable value in ecological studies.
最近的研究表明,环境DNA几乎无处不在。花瓣表面是用于研究环境DNA在自然界中扩散的一个有吸引力的组织,因为在花蕾开放之前,花瓣表面与外部环境隔离,只有在那时花瓣表面才能积累环境DNA。在这里,我们进行了一项众包实验,即“花见项目”,以在2015年春季从日本列岛各地的染井吉野樱花瓣表面获取环境DNA样本。染井吉野樱是日本最受欢迎的园林樱花品种,该品种的克隆植株每年春天同时开花。数据收集覆盖了几乎每个县,共收到来自149位合作者的577个DNA样本。初步的扩增子测序分析表明环境DNA能迅速附着在花瓣表面。值得注意的是,我们在广泛分布区域获取的样本中发现了其他常见植物物种的DNA;这些DNA可能来自日本雪松的花粉。我们的分析支持了我们的观点,即开花后的花瓣表面是揭示自然界中环境DNA动态的一个有前景的目标。我们实验的成功还表明,众包环境DNA分析在生态学研究中具有相当大的价值。