Rochman Nash D, Popescu Dan M, Sun Sean X
Department of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America.
Phys Biol. 2018 Mar 14;15(3):036006. doi: 10.1088/1478-3975/aab0e6.
Many single-cell observables are highly heterogeneous. A part of this heterogeneity stems from age-related phenomena: the fact that there is a nonuniform distribution of cells with different ages. This has led to a renewed interest in analytic methodologies including use of the 'von Foerster equation' for predicting population growth and cell age distributions. Here we discuss how some of the most popular implementations of this machinery assume a strong condition on the ergodicity of the cell cycle duration ensemble. We show that one common definition for the term ergodicity, 'a single individual observed over many generations recapitulates the behavior of the entire ensemble' is implied by the other, 'the probability of observing any state is conserved across time and over all individuals' in an ensemble with a fixed number of individuals but that this is not true when the ensemble is growing. We further explore the impact of generational correlations between cell cycle durations on the population growth rate. Finally, we explore the 'growth rate gain'-the phenomenon that variations in the cell cycle duration leads to an improved population-level growth rate-in this context. We highlight that, fundamentally, this effect is due to asymmetric division.
许多单细胞观测结果具有高度的异质性。这种异质性的一部分源于与年龄相关的现象:即不同年龄的细胞分布不均匀。这使得人们重新对包括使用“冯·福斯特方程”来预测种群增长和细胞年龄分布在内的分析方法产生了兴趣。在这里,我们讨论了这种机制的一些最流行的实现方式是如何对细胞周期持续时间总体的遍历性假设了一个强条件的。我们表明,遍历性这一术语的一个常见定义,即“在多代中观察到的单个个体概括了整个总体的行为”,在另一个定义,即在具有固定个体数量的总体中“观察到任何状态的概率在时间上和所有个体中都是守恒的”中是隐含的,但当总体在增长时情况并非如此。我们进一步探讨了细胞周期持续时间之间的代际相关性对种群增长率的影响。最后,我们在这种背景下探讨了“增长率增益”——即细胞周期持续时间的变化导致种群水平增长率提高的现象。我们强调,从根本上说,这种效应是由于不对称分裂。