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单细胞分裂时间的谱系相关性作为细胞周期动力学的探针。

Lineage correlations of single cell division time as a probe of cell-cycle dynamics.

机构信息

Department of Microbiology and Molecular Genetics, IMRIC, The Hebrew University Hadassah Medical School, Jerusalem 91120, Israel.

1] Department of Microbiology and Molecular Genetics, IMRIC, The Hebrew University Hadassah Medical School, Jerusalem 91120, Israel [2] Racah Institute of Physics, Edmond J. Safra Campus, The Hebrew University, Jerusalem 91904, Israel.

出版信息

Nature. 2015 Mar 26;519(7544):468-71. doi: 10.1038/nature14318. Epub 2015 Mar 11.

Abstract

Stochastic processes in cells are associated with fluctuations in mRNA, protein production and degradation, noisy partition of cellular components at division, and other cell processes. Variability within a clonal population of cells originates from such stochastic processes, which may be amplified or reduced by deterministic factors. Cell-to-cell variability, such as that seen in the heterogeneous response of bacteria to antibiotics, or of cancer cells to treatment, is understood as the inevitable consequence of stochasticity. Variability in cell-cycle duration was observed long ago; however, its sources are still unknown. A central question is whether the variance of the observed distribution originates from stochastic processes, or whether it arises mostly from a deterministic process that only appears to be random. A surprising feature of cell-cycle-duration inheritance is that it seems to be lost within one generation but to be still present in the next generation, generating poor correlation between mother and daughter cells but high correlation between cousin cells. This observation suggests the existence of underlying deterministic factors that determine the main part of cell-to-cell variability. We developed an experimental system that precisely measures the cell-cycle duration of thousands of mammalian cells along several generations and a mathematical framework that allows discrimination between stochastic and deterministic processes in lineages of cells. We show that the inter- and intra-generation correlations reveal complex inheritance of the cell-cycle duration. Finally, we build a deterministic nonlinear toy model for cell-cycle inheritance that reproduces the main features of our data. Our approach constitutes a general method to identify deterministic variability in lineages of cells or organisms, which may help to predict and, eventually, reduce cell-to-cell heterogeneity in various systems, such as cancer cells under treatment.

摘要

细胞中的随机过程与 mRNA、蛋白质的产生和降解波动、细胞分裂时细胞成分的随机分配以及其他细胞过程有关。细胞克隆群体中的变异性源于这种随机过程,这种变异性可能会被确定性因素放大或缩小。细胞间的变异性,如细菌对抗生素的异质反应或癌细胞对治疗的反应,被理解为随机性的必然结果。细胞周期持续时间的变异性很早就被观察到了;然而,其来源仍不清楚。一个核心问题是观察到的分布方差是源于随机过程,还是主要源于看似随机的确定性过程。细胞周期持续时间遗传的一个惊人特征是,它似乎在一代内丢失,但在下一代仍然存在,导致母细胞和子细胞之间相关性较差,但堂兄弟姐妹细胞之间相关性较高。这一观察结果表明,存在决定细胞间变异性主要部分的潜在确定性因素。我们开发了一种实验系统,可以精确测量数千个哺乳动物细胞在几代中的细胞周期持续时间,以及一个数学框架,允许在细胞系中区分随机和确定性过程。我们表明,代际和同代相关性揭示了细胞周期持续时间的复杂遗传。最后,我们构建了一个用于细胞周期遗传的确定性非线性玩具模型,该模型再现了我们数据的主要特征。我们的方法构成了一种识别细胞系或生物体中确定性变异性的通用方法,这可能有助于预测并最终减少各种系统(如治疗中的癌细胞)中的细胞间异质性。

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