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……的比较生物信息学分析

A comparative bioinformatic analysis of .

作者信息

Iyer Shalini, Acharya K Ravi, Subramanian Vasanta

机构信息

Department of Biology and Biochemistry, University of Bath, Bath, United Kingdom.

出版信息

PeerJ. 2018 Feb 19;6:e4391. doi: 10.7717/peerj.4391. eCollection 2018.

Abstract

is associated with frontotemporal dementia (FTD) and Amyotrophic Lateral Sclerosis (ALS), both of which are devastating neurodegenerative diseases. Findings suggest that an expanded hexanucleotide repeat in the non-coding region of the gene is the most common cause of familial FTD and ALS. Despite considerable efforts being made towards discerning the possible disease-causing mechanism/s of this repeat expansion mutation, the biological function of remains unclear. Here, we present the first comprehensive genomic study on gene. Analysis of the genomic level organization of across select species revealed architectural similarity of syntenic regions between human and mouse but a lack of conservation of the repeat-harboring intron 1 sequence. Information generated in this study provides a broad genomic perspective of which would form a basis for subsequent experimental approaches and facilitate future mechanistic and functional studies on this gene.

摘要

它与额颞叶痴呆(FTD)和肌萎缩侧索硬化症(ALS)相关,这两种都是毁灭性的神经退行性疾病。研究结果表明,该基因非编码区六核苷酸重复序列的扩增是家族性FTD和ALS最常见的病因。尽管人们为识别这种重复扩增突变可能的致病机制付出了巨大努力,但该基因的生物学功能仍不清楚。在此,我们展示了关于该基因的首个全面的基因组研究。对选定物种中该基因的基因组水平组织分析揭示了人类和小鼠之间同线性区域的结构相似性,但含有重复序列的内含子1序列缺乏保守性。本研究生成的信息提供了该基因广泛的基因组视角,这将为后续实验方法奠定基础,并促进对该基因未来的机制和功能研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/4f0e/5822839/fe666ece3563/peerj-06-4391-g001.jpg

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