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用半合成组蛋白研究染色质中的生化串扰。

Studies of biochemical crosstalk in chromatin with semisynthetic histones.

机构信息

Department of Chemistry, University of Washington, Seattle, WA 98195, United States.

Department of Chemistry, University of Washington, Seattle, WA 98195, United States.

出版信息

Curr Opin Chem Biol. 2018 Aug;45:27-34. doi: 10.1016/j.cbpa.2018.02.005. Epub 2018 Feb 27.

DOI:10.1016/j.cbpa.2018.02.005
PMID:29494828
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC6076846/
Abstract

Reversible post-translational modifications of histone proteins in eukaryotic chromatin are closely tied to gene function and cellular development. Specific combinations of histone modifications, or marks, are implicated in distinct DNA-templated processes mediated by a range of chromatin-associated enzymes that install, erase and interpret the histone code. Mechanistic studies of the precise biochemical relationship between sets of marks and their effects on chromatin function are significantly complicated by the dynamic nature and heterogeneity of marks in cellular chromatin. Protein semisynthesis is a chemical technique that enables the piecewise assembly of uniformly and site-specifically modified histones in quantities sufficient for biophysical and biochemical analyses. Recent pioneering efforts in semisynthesis have yielded access to histones site-specifically modified by entire proteins, such as ubiquitin (Ub) and the small ubiquitin-like modifier (SUMO). Herein, we highlight key studies of biochemical crosstalk involving Ub and SUMO in chromatin that were enabled by histone semisynthesis.

摘要

真核染色质中组蛋白蛋白的翻译后可逆修饰与基因功能和细胞发育密切相关。特定的组蛋白修饰(或标记)组合与一系列染色质相关酶介导的不同 DNA 模板过程有关,这些酶可以安装、擦除和解释组蛋白密码。由于细胞染色质中标记的动态性质和异质性,对标记之间的精确生化关系及其对染色质功能影响的机制研究变得非常复杂。蛋白质半合成是一种化学技术,它能够在足够的数量上,逐步组装均匀和位点特异性修饰的组蛋白,用于生物物理和生物化学分析。最近在半合成方面的开创性工作已经获得了整个蛋白质(如泛素 (Ub) 和小泛素样修饰物 (SUMO))特异性修饰的组蛋白。本文中,我们重点介绍了通过组蛋白半合成实现的涉及染色质中 Ub 和 SUMO 的生化串扰的关键研究。

相似文献

1
Studies of biochemical crosstalk in chromatin with semisynthetic histones.用半合成组蛋白研究染色质中的生化串扰。
Curr Opin Chem Biol. 2018 Aug;45:27-34. doi: 10.1016/j.cbpa.2018.02.005. Epub 2018 Feb 27.
2
Rapid Semisynthesis of Acetylated and Sumoylated Histone Analogs.乙酰化和类泛素化组蛋白类似物的快速半合成
Methods Enzymol. 2016;574:149-165. doi: 10.1016/bs.mie.2016.01.005. Epub 2016 Feb 9.
3
Sumoylated human histone H4 prevents chromatin compaction by inhibiting long-range internucleosomal interactions.经SUMO化修饰的人类组蛋白H4通过抑制远距离核小体间相互作用来阻止染色质压缩。
J Biol Chem. 2014 Dec 5;289(49):33827-37. doi: 10.1074/jbc.M114.591644. Epub 2014 Oct 6.
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Semisynthesis of ubiquitinated histone H2B with a native or nonhydrolyzable linkage.具有天然或不可水解连接的泛素化组蛋白H2B的半合成
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Synthetic post-translational modification of histones.组蛋白的合成后翻译修饰。
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Chemical approaches to understand the language of histone modifications.化学方法解析组蛋白修饰的语言。
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SUMO and Chromatin Remodeling.小泛素样修饰蛋白与染色质重塑
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Chemical chromatin ubiquitylation.化学染色质泛素化。
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The spread of chemical biology into chromatin.化学生物学向染色质领域的拓展。
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The semisynthesis of site-specifically modified histones and histone-based probes of chromatin-modifying enzymes.组蛋白的定点修饰半合成及其作为染色质修饰酶的探针
Methods. 2023 Jul;215:28-37. doi: 10.1016/j.ymeth.2023.05.004. Epub 2023 May 26.
3
Quantitative proteomics analysis to assess protein expression levels in the ovaries of pubescent goats.定量蛋白质组学分析评估青春期山羊卵巢中的蛋白质表达水平。

本文引用的文献

1
Total chemical synthesis of histones and their analogs, assisted by native chemical ligation and palladium complexes.通过天然化学连接和钯复合物辅助的组蛋白及其类似物的全化学合成。
Nat Protoc. 2017 Nov;12(11):2293-2322. doi: 10.1038/nprot.2017.049. Epub 2017 Oct 5.
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Chemically Sumoylated Histone H4 Stimulates Intranucleosomal Demethylation by the LSD1-CoREST Complex.化学修饰的SUMO化组蛋白H4通过LSD1-CoREST复合物刺激核小体内去甲基化。
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Jarid2 binds mono-ubiquitylated H2A lysine 119 to mediate crosstalk between Polycomb complexes PRC1 and PRC2.
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Examining histone modification crosstalk using immobilized libraries established from ligation-ready nucleosomes.使用从连接就绪核小体建立的固定化文库研究组蛋白修饰串扰。
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Chemoenzymatic Semisynthesis of Proteins.酶促化学法半合成蛋白质。
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Evidence that ubiquitylated H2B corrals hDot1L on the nucleosomal surface to induce H3K79 methylation.泛素化的H2B将hDot1L聚集在核小体表面以诱导H3K79甲基化的证据。
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Genetic code expansion in stable cell lines enables encoded chromatin modification.稳定细胞系中的遗传密码扩展可实现编码的染色质修饰。
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6
Semisynthetic UbH2A reveals different activities of deubiquitinases and inhibitory effects of H2A K119 ubiquitination on H3K36 methylation in mononucleosomes.半合成泛素化组蛋白H2A揭示了去泛素化酶的不同活性以及组蛋白H2A赖氨酸119位泛素化对单核小体中组蛋白H3赖氨酸36位甲基化的抑制作用。
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7
Identification of a functional hotspot on ubiquitin required for stimulation of methyltransferase activity on chromatin.鉴定泛素上一个对染色质甲基转移酶活性刺激所必需的功能性热点。
Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10365-70. doi: 10.1073/pnas.1504483112. Epub 2015 Aug 3.
8
Quantitative proteomic analysis of histone modifications.组蛋白修饰的定量蛋白质组学分析。
Chem Rev. 2015 Mar 25;115(6):2376-418. doi: 10.1021/cr500491u. Epub 2015 Feb 17.
9
Sumoylated human histone H4 prevents chromatin compaction by inhibiting long-range internucleosomal interactions.经SUMO化修饰的人类组蛋白H4通过抑制远距离核小体间相互作用来阻止染色质压缩。
J Biol Chem. 2014 Dec 5;289(49):33827-37. doi: 10.1074/jbc.M114.591644. Epub 2014 Oct 6.
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Uncovering global SUMOylation signaling networks in a site-specific manner.以特定方式揭示全球 SUMOylation 信号网络。
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