Molecular Dynamics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747AG Groningen, The Netherlands.
Molecular Cell Biology, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 7, 9747AG Groningen, The Netherlands.
Biochim Biophys Acta Biomembr. 2018 Jun;1860(6):1292-1300. doi: 10.1016/j.bbamem.2018.02.029. Epub 2018 Mar 1.
Pex11p plays a crucial role in peroxisome fission. Previously, it was shown that a conserved N-terminal amphipathic helix in Pex11p, termed Pex11-Amph, was necessary for peroxisomal fission in vivo while in vitro studies revealed that this region alone was sufficient to bring about tubulation of liposomes with a lipid consistency resembling the peroxisomal membrane. However, molecular details of how Pex11-Amph remodels the peroxisomal membrane remain unknown. Here we have combined in silico, in vitro and in vivo approaches to gain insights into the molecular mechanisms underlying Pex11-Amph activity. Using molecular dynamics simulations, we observe that Pex11-Amph peptides form linear aggregates on a model membrane. Furthermore, we identify mutations that disrupted this aggregation in silico, which also abolished the peptide's ability to remodel liposomes in vitro, establishing that Pex11p oligomerisation plays a direct role in membrane remodelling. In vivo studies revealed that these mutations resulted in a strong reduction in Pex11 protein levels, indicating that these residues are important for Pex11p function. Taken together, our data demonstrate the power of combining in silico techniques with experimental approaches to investigate the molecular mechanisms underlying Pex11p-dependent membrane remodelling.
Pex11p 在过氧化物酶体分裂中起着至关重要的作用。以前的研究表明,Pex11p 中一个保守的 N 端两亲性螺旋,称为 Pex11-Amph,对于体内过氧化物酶体分裂是必要的,而体外研究表明,该区域本身足以使脂质体发生管状化,其脂质组成类似于过氧化物酶体膜。然而,Pex11-Amph 重塑过氧化物酶体膜的分子细节仍然未知。在这里,我们结合了计算机模拟、体外和体内方法,以深入了解 Pex11-Amph 活性的分子机制。使用分子动力学模拟,我们观察到 Pex11-Amph 肽在模型膜上形成线性聚集体。此外,我们鉴定出了在计算机模拟中破坏这种聚集的突变,这也使肽在体外重塑脂质体的能力丧失,证明 Pex11p 寡聚化在膜重塑中起着直接作用。体内研究表明,这些突变导致 Pex11 蛋白水平的强烈降低,表明这些残基对 Pex11p 功能很重要。总之,我们的数据表明,将计算机模拟技术与实验方法相结合,研究 Pex11p 依赖性膜重塑的分子机制是非常有效的。