• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

最佳数量的锚定笼形水及其瞬时波动决定了昆虫抗冻蛋白识别冰面的特异性。

Optimum Number of Anchored Clathrate Water and Its Instantaneous Fluctuations Dictate Ice Plane Recognition Specificities of Insect Antifreeze Protein.

机构信息

Department of Physical Chemistry , Indian Association for the Cultivation of Science , Jadavpur, Kolkata 700032 , India.

出版信息

J Phys Chem B. 2018 Mar 29;122(12):3056-3067. doi: 10.1021/acs.jpcb.8b00548. Epub 2018 Mar 15.

DOI:10.1021/acs.jpcb.8b00548
PMID:29510055
Abstract

Ice recognition by antifreeze proteins (AFPs) is a subject of topical interest. Among several classes of AFPs, insect AFPs are hyperactive presumably due to their ability to adsorb on basal plane. However, the origin of the basal plane binding specificity is not clearly known. Present work aims to provide atomistic insight into the origin of basal plane recognition by an insect antifreeze protein. Free energy calculations reveal that the order of binding affinity of the AFP toward different ice planes is basal plane > prism plane > pyramidal plane. Critical insight reveals that the observed plane specificity is strongly correlated with the number and their instantaneous fluctuations of clathrate water forming hydrogen bonds with both ice binding surface (IBS) of AFP and ice surface, thus anchoring AFP to the ice surface. On basal plane, anchored clathrate water array is highly stable due to exact match in the periodicity of oxygen atom repeat distances of the ice surface and the threonine repeat distances at the IBS. The stability of anchored clathrate water array progressively decreases upon prism and pyramidal plane adsorption due to mismatch between the threonine ladder and oxygen atom repeat distance. Further analysis reveals that hydration around the methyl side-chains of threonine residues becomes highly significant at low temperature which stabilizes the anchored clathrate water array and dual hydrogen-bonding is a consequence of this stability. Structural insight gained from this study paves the way for rational designing of highly potent antifreeze-mimetic with potential industrial applications.

摘要

抗冻蛋白(AFPs)对冰的识别是一个备受关注的课题。在几种 AFP 中,昆虫 AFP 具有超活性,这可能是由于它们能够吸附在基面。然而,基面结合特异性的起源尚不清楚。目前的工作旨在为昆虫抗冻蛋白对基面的识别提供原子水平的见解。自由能计算表明,AFP 对不同冰面的结合亲和力顺序为基面>棱柱面>金字塔面。关键的洞察力表明,观察到的平面特异性与形成氢键的笼形水的数量及其瞬时波动强烈相关,这些氢键与 AFP 的冰结合表面(IBS)和冰表面形成,从而将 AFP 锚定在冰表面。在基面上,由于冰表面的氧原子重复距离和 IBS 处的苏氨酸重复距离的周期性完全匹配,锚定的笼形水排列非常稳定。由于在棱柱和金字塔面吸附时苏氨酸梯级和氧原子重复距离不匹配,锚定的笼形水排列的稳定性逐渐降低。进一步的分析表明,在低温下,苏氨酸残基的甲基侧链周围的水合作用变得非常重要,这稳定了锚定的笼形水排列,而双重氢键是这种稳定性的结果。这项研究获得的结构见解为具有潜在工业应用的高效防冻剂模拟物的合理设计铺平了道路。

相似文献

1
Optimum Number of Anchored Clathrate Water and Its Instantaneous Fluctuations Dictate Ice Plane Recognition Specificities of Insect Antifreeze Protein.最佳数量的锚定笼形水及其瞬时波动决定了昆虫抗冻蛋白识别冰面的特异性。
J Phys Chem B. 2018 Mar 29;122(12):3056-3067. doi: 10.1021/acs.jpcb.8b00548. Epub 2018 Mar 15.
2
Molecular Insight into the Adsorption of Spruce Budworm Antifreeze Protein to an Ice Surface: A Clathrate-Mediated Recognition Mechanism.分子洞察云杉卷叶蛾抗冻蛋白与冰表面的吸附:一种笼形物介导的识别机制。
Langmuir. 2017 Jul 18;33(28):7202-7214. doi: 10.1021/acs.langmuir.7b01733. Epub 2017 Jul 5.
3
Preordering of water is not needed for ice recognition by hyperactive antifreeze proteins.过冷水中的冰识别并不需要通过抗冻蛋白的预订单来完成。
Proc Natl Acad Sci U S A. 2018 Aug 14;115(33):8266-8271. doi: 10.1073/pnas.1806996115. Epub 2018 Jul 9.
4
Revealing Surface Waters on an Antifreeze Protein by Fusion Protein Crystallography Combined with Molecular Dynamic Simulations.通过融合蛋白晶体学结合分子动力学模拟揭示抗冻蛋白上的表面水域
J Phys Chem B. 2015 Oct 8;119(40):12808-15. doi: 10.1021/acs.jpcb.5b06474. Epub 2015 Sep 25.
5
Ordered hydration layer mediated ice adsorption of a globular antifreeze protein: mechanistic insight.有序水化层介导的球状抗冻蛋白对冰的吸附:作用机制的见解。
Phys Chem Chem Phys. 2019 Sep 21;21(35):19298-19310. doi: 10.1039/c9cp03135a. Epub 2019 Aug 27.
6
Molecular Factors of Ice Growth Inhibition for Hyperactive and Globular Antifreeze Proteins: Insights from Molecular Dynamics Simulation.高活性和球状抗冻蛋白抑制冰生长的分子因素:来自分子动力学模拟的见解
Langmuir. 2022 Dec 13;38(49):15132-15144. doi: 10.1021/acs.langmuir.2c02149. Epub 2022 Nov 30.
7
Ice-Nucleating and Antifreeze Proteins Recognize Ice through a Diversity of Anchored Clathrate and Ice-like Motifs.冰核蛋白和抗冻蛋白通过多种锚定的笼形水合物和冰样基序识别冰。
J Am Chem Soc. 2018 Apr 11;140(14):4905-4912. doi: 10.1021/jacs.8b01246. Epub 2018 Apr 2.
8
Effects of hydrophobic and hydrogen-bond interactions on the binding affinity of antifreeze proteins to specific ice planes.疏水相互作用和氢键相互作用对抗冻蛋白与特定冰面结合亲和力的影响。
J Mol Graph Model. 2019 Mar;87:48-55. doi: 10.1016/j.jmgm.2018.11.006. Epub 2018 Nov 20.
9
Anchored clathrate waters bind antifreeze proteins to ice.锚定的笼形水合物将抗冻蛋白结合到冰上。
Proc Natl Acad Sci U S A. 2011 May 3;108(18):7363-7. doi: 10.1073/pnas.1100429108. Epub 2011 Apr 11.
10
Hydrogen-Bonding and Hydrophobic Groups Contribute Equally to the Binding of Hyperactive Antifreeze and Ice-Nucleating Proteins to Ice.氢键和疏水基团对等贡献于高活性抗冻蛋白和冰核蛋白与冰的结合。
J Am Chem Soc. 2019 May 15;141(19):7887-7898. doi: 10.1021/jacs.9b02248. Epub 2019 May 3.

引用本文的文献

1
Water entropy at the threonine-rich surface of antifreeze and ice-nucleating proteins: small changes make a big difference.抗冻蛋白和冰核蛋白富含苏氨酸表面的水熵:微小变化产生重大影响。
Chem Sci. 2025 May 9. doi: 10.1039/d4sc08383k.
2
Bioinspired Threonine-Based Polymers with Potent Ice Recrystallization Inhibition Activity.具有高效冰重结晶抑制活性的仿生苏氨酸基聚合物
ACS Appl Polym Mater. 2022 Oct 14;4(10):7934-7942. doi: 10.1021/acsapm.2c01496. Epub 2022 Oct 3.
3
Ice-binding proteins and bioinspired synthetic mimics in non-physiological environments.
非生理环境中的冰结合蛋白及受生物启发的合成模拟物
iScience. 2022 Apr 22;25(5):104286. doi: 10.1016/j.isci.2022.104286. eCollection 2022 May 20.
4
Subzero Nonfreezing Hypothermia with Insect Antifreeze Protein Dramatically Improves Survival Rate of Mammalian Cells.超低温非冻结性低体温与昆虫抗冻蛋白显著提高哺乳动物细胞的存活率。
Int J Mol Sci. 2021 Nov 24;22(23):12680. doi: 10.3390/ijms222312680.
5
Characterization of microbial antifreeze protein with intermediate activity suggests that a bound-water network is essential for hyperactivity.具有中间活性的微生物抗冻蛋白的特性表明,结合水网络对于超活性是必不可少的。
Sci Rep. 2021 Mar 16;11(1):5971. doi: 10.1038/s41598-021-85559-x.
6
Hydroxyl Group Separation Distances in Anti-Freeze Compounds and Their Effects on Ice Nucleation.抗冻化合物中羟基的分离距离及其对冰核形成的影响。
Int J Mol Sci. 2020 Nov 11;21(22):8488. doi: 10.3390/ijms21228488.