Department of Physical Chemistry , Indian Association for the Cultivation of Science , Jadavpur, Kolkata 700032 , India.
J Phys Chem B. 2018 Mar 29;122(12):3056-3067. doi: 10.1021/acs.jpcb.8b00548. Epub 2018 Mar 15.
Ice recognition by antifreeze proteins (AFPs) is a subject of topical interest. Among several classes of AFPs, insect AFPs are hyperactive presumably due to their ability to adsorb on basal plane. However, the origin of the basal plane binding specificity is not clearly known. Present work aims to provide atomistic insight into the origin of basal plane recognition by an insect antifreeze protein. Free energy calculations reveal that the order of binding affinity of the AFP toward different ice planes is basal plane > prism plane > pyramidal plane. Critical insight reveals that the observed plane specificity is strongly correlated with the number and their instantaneous fluctuations of clathrate water forming hydrogen bonds with both ice binding surface (IBS) of AFP and ice surface, thus anchoring AFP to the ice surface. On basal plane, anchored clathrate water array is highly stable due to exact match in the periodicity of oxygen atom repeat distances of the ice surface and the threonine repeat distances at the IBS. The stability of anchored clathrate water array progressively decreases upon prism and pyramidal plane adsorption due to mismatch between the threonine ladder and oxygen atom repeat distance. Further analysis reveals that hydration around the methyl side-chains of threonine residues becomes highly significant at low temperature which stabilizes the anchored clathrate water array and dual hydrogen-bonding is a consequence of this stability. Structural insight gained from this study paves the way for rational designing of highly potent antifreeze-mimetic with potential industrial applications.
抗冻蛋白(AFPs)对冰的识别是一个备受关注的课题。在几种 AFP 中,昆虫 AFP 具有超活性,这可能是由于它们能够吸附在基面。然而,基面结合特异性的起源尚不清楚。目前的工作旨在为昆虫抗冻蛋白对基面的识别提供原子水平的见解。自由能计算表明,AFP 对不同冰面的结合亲和力顺序为基面>棱柱面>金字塔面。关键的洞察力表明,观察到的平面特异性与形成氢键的笼形水的数量及其瞬时波动强烈相关,这些氢键与 AFP 的冰结合表面(IBS)和冰表面形成,从而将 AFP 锚定在冰表面。在基面上,由于冰表面的氧原子重复距离和 IBS 处的苏氨酸重复距离的周期性完全匹配,锚定的笼形水排列非常稳定。由于在棱柱和金字塔面吸附时苏氨酸梯级和氧原子重复距离不匹配,锚定的笼形水排列的稳定性逐渐降低。进一步的分析表明,在低温下,苏氨酸残基的甲基侧链周围的水合作用变得非常重要,这稳定了锚定的笼形水排列,而双重氢键是这种稳定性的结果。这项研究获得的结构见解为具有潜在工业应用的高效防冻剂模拟物的合理设计铺平了道路。